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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nyn SGV G protein-coupled receptor kinase 6 2.7.11.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nyn SGVG protein-coupled receptor kinase 6 2.7.11.16 0.837
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4xlv ACPInsulin receptor 2.7.10.1 0.698
2vuw 5IDSerine/threonine-protein kinase haspin 2.7.11.1 0.696
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.694
4fl3 ANPTyrosine-protein kinase SYK 2.7.10.2 0.693
4tnb SGVG protein-coupled receptor kinase 5 2.7.11.16 0.687
4pds ANPSerine/threonine-protein kinase RAD53 2.7.12.1 0.685
2olc ADPMethylthioribose kinase 2.7.1.100 0.683
4h3q ANPMitogen-activated protein kinase 1 2.7.11.24 0.681
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.678
3uim ANPBRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 2.7.10.1 0.677
4gv1 0XZRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.676
4lv7 ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.674
4fl1 ANPTyrosine-protein kinase SYK 2.7.10.2 0.671
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.670
2zdg ADPD-alanine--D-alanine ligase / 0.669
4jrn ANPRhoptry kinase family protein / 0.669
1qpe PP2Tyrosine-protein kinase Lck 2.7.10.2 0.667
4lgg VGGProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.667
2pun ACPMethylthioribose kinase 2.7.1.100 0.666
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.666
4b8l A0PAurora kinase B-A 2.7.11.1 0.666
1jpa ANPEphrin type-B receptor 2 2.7.10.1 0.664
2zv9 PP2Tyrosine-protein kinase Lyn 2.7.10.2 0.664
3niz ADPCdc2-like CDK2/CDC28 like protein kinase / 0.664
3t54 ATPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.664
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.664
1qmz ATPCyclin-dependent kinase 2 2.7.11.22 0.663
4iay ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
2j0l ANPFocal adhesion kinase 1 2.7.10.2 0.662
3vs7 KS1Tyrosine-protein kinase HCK 2.7.10.2 0.662
4ct2 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.662
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.661
2itx ANPEpidermal growth factor receptor 2.7.10.1 0.660
3juh ANPCasein kinase II subunit alpha 2.7.11.1 0.660
4e5f 0N7Polymerase acidic protein / 0.660
3bu5 ATPInsulin receptor 2.7.10.1 0.659
4crs AGSSerine/threonine-protein kinase N2 2.7.11.13 0.659
2wmx ZY6Serine/threonine-protein kinase Chk1 2.7.11.1 0.658
3agl A03cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
4ocp ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.657
1ad5 ANPTyrosine-protein kinase HCK 2.7.10.2 0.655
3bht MFRCyclin-dependent kinase 2 2.7.11.22 0.655
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4ysj ADPCalmodulin-like domain protein kinase / 0.654
5ax3 5IDMitogen-activated protein kinase 1 2.7.11.24 0.654
5dn3 ATPAurora kinase A 2.7.11.1 0.654
4eom ATPCyclin-dependent kinase 2 2.7.11.22 0.653
4iir ANPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.653
1ol5 ADPAurora kinase A 2.7.11.1 0.652
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
4q5j ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.652
4s33 ANPMitogen-activated protein kinase 1 2.7.11.24 0.652
1ir3 ANPInsulin receptor 2.7.10.1 0.651
2ijm ATPFocal adhesion kinase 1 2.7.10.2 0.651
4wh2 ADPN-acetylhexosamine 1-kinase 2.7.1.162 0.651
5cvh ADPCasein kinase II subunit alpha 2.7.11.1 0.651
1fq1 ATPCyclin-dependent kinase 2 2.7.11.22 0.650