2.110 Å
X-ray
2014-06-03
| Name: | G protein-coupled receptor kinase 5 |
|---|---|
| ID: | GRK5_HUMAN |
| AC: | P34947 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.16 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 29.240 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.462 | 428.625 |
| % Hydrophobic | % Polar |
|---|---|
| 48.82 | 51.18 |
| According to VolSite | |

| HET Code: | SGV |
|---|---|
| Formula: | C12H15N5O5 |
| Molecular weight: | 309.278 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 62.41 % |
| Polar Surface area: | 169.73 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 28.193 | -35.0191 | 27.257 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2' | O | LEU- 192 | 3.37 | 125.88 | H-Bond (Ligand Donor) |
| C5 | CG1 | VAL- 200 | 4.05 | 0 | Hydrophobic |
| C1' | CB | VAL- 200 | 4.34 | 0 | Hydrophobic |
| C5 | CB | ALA- 213 | 4.43 | 0 | Hydrophobic |
| N6 | O | THR- 264 | 2.68 | 153.77 | H-Bond (Ligand Donor) |
| N1 | N | MET- 266 | 2.88 | 167.24 | H-Bond (Protein Donor) |
| C5 | CD1 | LEU- 318 | 3.39 | 0 | Hydrophobic |
| C3' | CD2 | LEU- 318 | 4.3 | 0 | Hydrophobic |
| N11 | OD1 | ASP- 329 | 2.64 | 147.09 | H-Bond (Ligand Donor) |
| O12 | O | HOH- 804 | 2.91 | 179.97 | H-Bond (Protein Donor) |