2.110 Å
X-ray
2014-06-03
Name: | G protein-coupled receptor kinase 5 |
---|---|
ID: | GRK5_HUMAN |
AC: | P34947 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.16 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 29.240 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.462 | 428.625 |
% Hydrophobic | % Polar |
---|---|
48.82 | 51.18 |
According to VolSite |
HET Code: | SGV |
---|---|
Formula: | C12H15N5O5 |
Molecular weight: | 309.278 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 62.41 % |
Polar Surface area: | 169.73 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
28.193 | -35.0191 | 27.257 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | O | LEU- 192 | 3.37 | 125.88 | H-Bond (Ligand Donor) |
C5 | CG1 | VAL- 200 | 4.05 | 0 | Hydrophobic |
C1' | CB | VAL- 200 | 4.34 | 0 | Hydrophobic |
C5 | CB | ALA- 213 | 4.43 | 0 | Hydrophobic |
N6 | O | THR- 264 | 2.68 | 153.77 | H-Bond (Ligand Donor) |
N1 | N | MET- 266 | 2.88 | 167.24 | H-Bond (Protein Donor) |
C5 | CD1 | LEU- 318 | 3.39 | 0 | Hydrophobic |
C3' | CD2 | LEU- 318 | 4.3 | 0 | Hydrophobic |
N11 | OD1 | ASP- 329 | 2.64 | 147.09 | H-Bond (Ligand Donor) |
O12 | O | HOH- 804 | 2.91 | 179.97 | H-Bond (Protein Donor) |