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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nb5 R21 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.868
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.818
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.806
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.799
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.792
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.790
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.789
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.778
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.772
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.769
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.769
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.767
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.766
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.765
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.764
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.763
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.760
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.757
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.756
3mho J43Carbonic anhydrase 2 4.2.1.1 0.755
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.749
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.744
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.743
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.739
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.737
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.736
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.736
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.735
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.734
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.732
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.731
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.731
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.730
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.729
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.729
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.728
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.727
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.725
1okn STBCarbonic anhydrase 2 4.2.1.1 0.724
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.724
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.723
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.721
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.720
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.720
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.720
4uov AZMCarbonate dehydratase / 0.720
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.719
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.718
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.716
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.712
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.709
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.708
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.706
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.706
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.706
4xiw AZMCarbonic anhydrase, alpha type / 0.706
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.705
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.703
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.703
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.702
1okm SABCarbonic anhydrase 2 4.2.1.1 0.702
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.702
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.700
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.698
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.696
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.695
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.693
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.692
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.691
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.691
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.688
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.686
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.684
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.684
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.683
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.682
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.682
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.681
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.677
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.677
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.677
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.676
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.676
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.675
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.675
1eou SMSCarbonic anhydrase 2 4.2.1.1 0.673
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.671
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.670
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.670
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 0.669
3myq E27Carbonic anhydrase 2 4.2.1.1 0.669
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.668
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.667
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.666
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.662
4mo8 2VQCarbonic anhydrase 2 4.2.1.1 0.657
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.656
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.656
1yda AZMCarbonic anhydrase 2 4.2.1.1 0.653
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.653
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.653
1vhz APRADP compounds hydrolase NudE 3.6.1 0.650