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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fpk FAD Ferredoxin-NADP reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fpk FADFerredoxin-NADP reductase / 1.329
1fdr FADFerredoxin--NADP reductase 1.18.1.2 1.130
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 1.050
1cqx FADFlavohemoprotein / 1.044
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 1.030
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.009
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.002
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.957
4y9u FADNADPH--cytochrome P450 reductase / 0.946
3qfs FADNADPH--cytochrome P450 reductase / 0.935
3qfc FADNADPH--cytochrome P450 reductase / 0.929
4y7c FADNADPH--cytochrome P450 reductase / 0.924
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.917
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.908
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.906
4y9r FADNADPH--cytochrome P450 reductase / 0.900
4fk8 FADFerredoxin--NADP reductase / 0.889
2pia FMNPhthalate dioxygenase reductase / 0.878
1que FADFerredoxin--NADP reductase 1.18.1.2 0.868
3qe2 FADNADPH--cytochrome P450 reductase / 0.868
3qfr FADNADPH--cytochrome P450 reductase / 0.868
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.867
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.862
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.856
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.856
3w5u FADFerredoxin / 0.846
2eix FADNADH-cytochrome b5 reductase / 0.845
4k1x FADNADPH:ferredoxin reductase / 0.842
4yau FADNADPH--cytochrome P450 reductase / 0.842
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.841
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.841
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.840
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.833
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.833
2rc6 FADFerredoxin--NADP reductase / 0.831
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.822
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.821
1gvh FADFlavohemoprotein / 0.817
1sm4 FADFerredoxin--NADP reductase / 0.817
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.811
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.810
1gaw FADFerredoxin / 0.808
2bgj FADNADPH:ferredoxin reductase / 0.808
1amo FADNADPH--cytochrome P450 reductase / 0.807
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.807
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.806
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.805
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.805
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.804
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.804
3ojw FADNADPH--cytochrome P450 reductase / 0.802
2bf4 FADNADPH--cytochrome P450 reductase / 0.800
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.794
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.793
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.792
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.792
4yaf FADNADPH--cytochrome P450 reductase / 0.792
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.790
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.790
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.789
3vo2 FADFerredoxin--NADP reductase / 0.789
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.786
4yao FADNADPH--cytochrome P450 reductase / 0.784
2vnk FADNADPH:ferredoxin reductase / 0.780
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.779
2rc5 FADFerredoxin--NADP reductase / 0.779
1ja1 FADNADPH--cytochrome P450 reductase / 0.772
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.769
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.766
2bn4 FADNADPH--cytochrome P450 reductase / 0.766
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.763
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.748
1tll FADNitric oxide synthase, brain 1.14.13.39 0.746
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.745
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.742
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.741
1gaq FADFerredoxin / 0.730
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.725
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.724
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.719
3in6 FMNUncharacterized protein / 0.718
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.715
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.714
1usc FMNMonooxygenase / 0.713
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.712
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.710
3qft FADNADPH--cytochrome P450 reductase / 0.710
3e4v FMNUncharacterized protein / 0.708
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.708
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.707
1a8p FADFerredoxin--NADP reductase / 0.705
4b4d FADFerredoxin-NADP reductase / 0.705
2ptf FMNUncharacterized protein MTH_863 / 0.703
1eje FMNProtein MTH_152 / 0.699
2vnj FADNADPH:ferredoxin reductase / 0.699
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.698
1ja0 FADNADPH--cytochrome P450 reductase / 0.697
3t37 FADPyridoxine 4-oxidase / 0.695
3pl8 FADPyranose 2-oxidase / 0.693
2nr4 FMNConserved protein / 0.692
2qdx FADFerredoxin--NADP+ reductase / 0.691
4fwj FADLysine-specific histone demethylase 1B 1 0.688
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.687
3q9t FAYUncharacterized protein / 0.685
3crz FADFerredoxin--NADP+ reductase / 0.683
3lsh FADPyranose 2-oxidase / 0.681
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.679
1j9z FADNADPH--cytochrome P450 reductase / 0.677
2vnh FADNADPH:ferredoxin reductase / 0.677
2hq9 FADMll6688 protein / 0.674
3a3b RBFLumazine protein / 0.673
4l82 FMNUncharacterized protein / 0.673
3lsi FADPyranose 2-oxidase / 0.672
4fwe FADLysine-specific histone demethylase 1B 1 0.672
2yg6 FADPutrescine oxidase / 0.669
3a3g DLZLumazine protein / 0.669
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.666
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.666
3vy2 FMNFMN-binding protein / 0.664
3kpf FADPolyamine oxidase 1.5.3.14 0.663
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.662
3pft FMNFlavin reductase / 0.662
4qvb F42F420H(2)-dependent reductase Rv1155 1.4.3.5 0.661
4rhe FMNFlavin prenyltransferase UbiX / 0.660
1wlk FMNFMN-binding protein / 0.659
4eer FMNPhototropin-2 2.7.11.1 0.658
3k4c FADPyranose 2-oxidase / 0.657
3ka7 FADPutative oxidoreductase / 0.656
3ojx FADNADPH--cytochrome P450 reductase / 0.656
3mzi FMNActivator of photopigment and puc expression / 0.654
3r5y F42Uncharacterized protein / 0.654
2aqj FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.653
1wli FMNFMN-binding protein / 0.652
2bab FADPutative aminooxidase / 0.652
3a6q FMNFMN-binding protein / 0.652
1n4u FAECholesterol oxidase 1.1.3.6 0.651
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.651
2gew FADCholesterol oxidase 1.1.3.6 0.651
3a6r FMNFMN-binding protein / 0.651
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.651
1b8s FADCholesterol oxidase 1.1.3.6 0.650
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.650
3gyi FADCholesterol oxidase 1.1.3.6 0.650