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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3esz FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3esz FMNFlavodoxin / 1.365
3esy FMNFlavodoxin / 1.086
1ahn FMNFlavodoxin 1 / 1.070
2v5u FMNFlavodoxin / 1.070
1czn FMNFlavodoxin / 1.056
1ofv FMNFlavodoxin / 1.041
2v5v FMNFlavodoxin / 1.031
1j8q FMNFlavodoxin / 0.950
1azl FMNFlavodoxin / 0.929
1akr FMNFlavodoxin / 0.928
2fx2 FMNFlavodoxin / 0.926
1wsb FMNFlavodoxin / 0.916
1yob FMNFlavodoxin 2 / 0.899
1akw FMNFlavodoxin / 0.879
2mok FMNFlavodoxin 1 / 0.855
1j9g FMNFlavodoxin / 0.846
3f6s FMNFlavodoxin / 0.832
1xyv FMNFlavodoxin / 0.831
5tgz FMNCannabinoid receptor 1 / 0.824
1aku FMNFlavodoxin / 0.819
1c7f FMNFlavodoxin / 0.814
5xra FMNCannabinoid receptor 1 / 0.813
1xyy FMNFlavodoxin / 0.804
4fx2 FMNFlavodoxin / 0.796
1fx1 FMNFlavodoxin / 0.794
2bf4 FMNNADPH--cytochrome P450 reductase / 0.793
4oxx FMNCindoxin / 0.781
5xr8 FMNCannabinoid receptor 1 / 0.773
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.754
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.747
4bmp FMNProtein NrdI / 0.745
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.744
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.741
2ohj FMNType A flavoprotein FprA 1 0.737
1amo FMNNADPH--cytochrome P450 reductase / 0.736
3qfr FMNNADPH--cytochrome P450 reductase / 0.735
3f6r FMNFlavodoxin / 0.732
3qe2 FMNNADPH--cytochrome P450 reductase / 0.732
1v93 FADMethylenetetrahydrofolate reductase / 0.727
2ohh FMNType A flavoprotein FprA 1 0.727
3kap FMNFlavodoxin / 0.727
3f90 FMNFlavodoxin / 0.726
3n39 FMNProtein NrdI / 0.721
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.719
4bmo FMNProtein NrdI / 0.719
1ja0 FMNNADPH--cytochrome P450 reductase / 0.718
2bn4 FMNNADPH--cytochrome P450 reductase / 0.711
2fcr FMNFlavodoxin / 0.711
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.710
4yao FMNNADPH--cytochrome P450 reductase / 0.710
2ohi FMNType A flavoprotein FprA 1 0.708
4y7c FMNNADPH--cytochrome P450 reductase / 0.704
3ojx FMNNADPH--cytochrome P450 reductase / 0.702
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.700
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.699
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.695
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.695
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.691
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.690
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.689
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.688
3ojw FMNNADPH--cytochrome P450 reductase / 0.688
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.687
1ycg FMNNitric oxide reductase 1 0.686
1ych FMNNitric oxide reductase 1 0.686
3gka FMNN-ethylmaleimide reductase / 0.686
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.685
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.683
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.683
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.683
3n3a FMNProtein NrdI / 0.680
3p67 FMNPentaerythritol tetranitrate reductase / 0.680
3p8j FMNPentaerythritol tetranitrate reductase / 0.680
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.679
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.678
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.677
4tmb FMNOld yellow enzyme / 0.676
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.674
1zp3 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.673
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.672
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.672
2wzv FMNNitroreductase NfnB / 0.672
3aty FMNProstaglandin F2a synthase / 0.672
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.672
1bu5 RBFFlavodoxin / 0.671
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
1h50 FMNPentaerythritol tetranitrate reductase / 0.670
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.670
2abb FMNPentaerythritol tetranitrate reductase / 0.670
2h8x FMNXenA / 0.670
2q9u FMNA-type flavoprotein / 0.670
3p84 FMNPentaerythritol tetranitrate reductase / 0.670
3p8i FMNPentaerythritol tetranitrate reductase / 0.670
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.669
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.668
5fx2 FMNFlavodoxin / 0.668
1ycf FMNNitric oxide reductase 1 0.667
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.667
1h51 FMNPentaerythritol tetranitrate reductase / 0.666
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.666
1vyr FMNPentaerythritol tetranitrate reductase / 0.666
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.666
1h63 FMNPentaerythritol tetranitrate reductase / 0.665
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.665
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.665
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.663
3p74 FMNPentaerythritol tetranitrate reductase / 0.663
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.662
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.662
1z44 FMNNADPH dehydrogenase / 0.661
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.661
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.659
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.658
2c12 FADNitroalkane oxidase 1.7.3.1 0.658
4utl FNRXenobiotic reductase / 0.658
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.657
4utk FNRXenobiotic reductase / 0.657
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.656
2wzw FMNNitroreductase NfnB / 0.656
3p62 FMNPentaerythritol tetranitrate reductase / 0.656
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.654
2e77 FMNLactate oxidase / 0.654
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.654
2z6i FMN2-nitropropane dioxygenase / 0.654
3kaq FMNFlavodoxin / 0.653
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.652
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.652
3rpe FADPutative modulator of drug activity / 0.652
5ahs FADAcyl-CoA dehydrogenase / 0.652
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.651
2eba FADPutative glutaryl-CoA dehydrogenase / 0.650
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.650