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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dcs MZM Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.843
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.799
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.789
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.789
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.775
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.758
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.754
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.751
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.749
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.746
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.745
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.744
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.743
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.738
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.737
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.736
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.733
4uov AZMCarbonate dehydratase / 0.733
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.730
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.725
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.723
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.723
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.723
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.722
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.722
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.720
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.720
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.720
4xiw AZMCarbonic anhydrase, alpha type / 0.717
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.716
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.716
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.715
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.715
1okm SABCarbonic anhydrase 2 4.2.1.1 0.714
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.713
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.713
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.711
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.711
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.711
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.710
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.709
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.709
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.707
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.706
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.704
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.703
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.703
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.702
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.702
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.701
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.700
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.698
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.698
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.697
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.695
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.695
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.695
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.695
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.691
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.690
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.690
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.690
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.690
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.689
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.689
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.688
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.688
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.684
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.684
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.683
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.683
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.682
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.681
1okl MNSCarbonic anhydrase 2 4.2.1.1 0.680
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.680
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.680
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.679
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.678
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.678
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.678
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.672
1yda AZMCarbonic anhydrase 2 4.2.1.1 0.669
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.665
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.665
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.665
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.663
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.659
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.658
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.656
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.654
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.654
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.652
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.650