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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xi3 GTP Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xi3 GTPGenome polyprotein 2.7.7.48 0.834
1eyn 2ANUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.744
1sa4 JANProtein farnesyltransferase subunit beta 2.5.1.58 0.744
2iej S48Protein farnesyltransferase subunit beta 2.5.1.58 0.744
2xf3 J01Uncharacterized protein / 0.744
2xvv 9DNSerum albumin / 0.744
3k14 5352-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 0.744
3ksq Z96Protein farnesyltransferase subunit beta 2.5.1.58 0.744
3nfa CBJGag-Pol polyprotein / 0.744
3ngq 1PSCCR4-NOT transcription complex subunit 6-like 3.1.13.4 0.744
3nks ACJProtoporphyrinogen oxidase 1.3.3.4 0.744
3o3j BB4Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.744
3pz3 PZ3Geranylgeranyl transferase type-2 subunit beta 2.5.1.60 0.744
3pz4 3PZProtein farnesyltransferase subunit beta 2.5.1.58 0.744
3sfx JANUncharacterized protein / 0.744
3zns NU7Histone deacetylase 7 3.5.1.98 0.744
4dsb A8SAbscisic acid receptor PYL3 / 0.744
4gtp 7TPProtein farnesyltransferase subunit beta 2.5.1.58 0.744
4kla CHDFerrochelatase, mitochondrial 4.99.1.1 0.744
4lnb ED5CaaX farnesyltransferase beta subunit Ram1 / 0.744
5dby DIFSerum albumin / 0.744
5jqb IBPEnvelope glycoprotein / 0.744
5kcp PFBAlcohol dehydrogenase E chain 1.1.1.1 0.744
1lrh NLAAuxin-binding protein 1 / 0.660
1pl6 572Sorbitol dehydrogenase 1.1.1.14 0.660
1rml NTSFibroblast growth factor 1 / 0.660
1sqi 8694-hydroxyphenylpyruvate dioxygenase / 0.660
1t47 NTD4-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.660
1tfz 8694-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.660
1tg5 6454-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.660
1uof PNNDeacetoxycephalosporin C synthase 1.14.20.1 0.660
2qd3 CHDFerrochelatase, mitochondrial 4.99.1.1 0.660
2y6d TQJMatrilysin 3.4.24.23 0.660
3fgo CZASarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.660
3pcn DHYProtocatechuate 3,4-dioxygenase alpha chain 1.13.11.3 0.660
3pcn DHYProtocatechuate 3,4-dioxygenase beta chain 1.13.11.3 0.660
4pxx CHDCarbonic anhydrase 2 4.2.1.1 0.660
5cto NTD4-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.660