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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2iyi FMN AppA, antirepressor of ppsR, sensor of blue light

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2iyi FMNAppA, antirepressor of ppsR, sensor of blue light / 1.000
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.898
4hh0 FMNAppA protein / 0.876
3gg1 FMNUncharacterized protein / 0.811
1yrx FMNAppA protein / 0.801
1x0p FADTll0078 protein / 0.764
3gfx FMNUncharacterized protein / 0.755
2hfn FMNActivator of photopigment and puc expression / 0.747
3gg0 FMNUncharacterized protein / 0.746
4yus FMNFamily 3 adenylate cyclase / 0.742
2pr5 FMNBlue-light photoreceptor / 0.735
4hhd FMNPhototropin-1 2.7.11.1 0.735
4kuk RBFPutative blue-light photoreceptor / 0.732
2byc FMNBlue-light receptor of the BLUF-family / 0.730
3hji FADVivid PAS protein VVD / 0.728
2hfo FMNActivator of photopigment and puc expression / 0.724
3mzi FMNActivator of photopigment and puc expression / 0.723
4eeu FMNPhototropin-2 2.7.11.1 0.715
1efp FADElectron transfer flavoprotein subunit alpha / 0.712
3gfy FMNUncharacterized protein / 0.711
4hj3 FMNLOV protein / 0.708
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.704
2z6c FMNPhototropin-1 2.7.11.1 0.701
1n9l FMNPutative blue light receptor / 0.700
1ng3 FADGlycine oxidase 1.4.3.19 0.699
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.699
4hj6 FMNLOV protein / 0.699
1ryi FADGlycine oxidase 1.4.3.19 0.698
4hia FMNLOV protein / 0.696
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.694
3ad9 FADSubunit beta of sarcosine oxidase / 0.692
2z6d FMNPhototropin-2 2.7.11.1 0.690
5j4e FMNSensory box protein / 0.690
3cls FADElectron transfer flavoprotein subunit alpha / 0.688
2pdt FADVivid PAS protein VVD / 0.685
3pl8 FADPyranose 2-oxidase / 0.685
2pd7 FADVivid PAS protein VVD / 0.682
4c3x FAD3-ketosteroid dehydrogenase / 0.681
2du8 FADD-amino-acid oxidase 1.4.3.3 0.680
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.679
3clr FADElectron transfer flavoprotein subunit alpha / 0.678
3cuk FADD-amino-acid oxidase 1.4.3.3 0.678
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.677
4hnb FMNLOV protein / 0.676
1n9n FMNPutative blue light receptor / 0.675
4f07 FADStyrene monooxygenase component 2 / 0.675
4opl FDAConserved Archaeal protein / 0.670
2gr3 FADFerredoxin reductase / 0.669
3k4n FADPyranose 2-oxidase / 0.669
2pd8 FADVivid PAS protein VVD / 0.667
3da1 FADGlycerol-3-phosphate dehydrogenase / 0.667
3in6 FMNUncharacterized protein / 0.667
4em4 FADCoenzyme A disulfide reductase / 0.667
1n07 FMNRiboflavin kinase 2.7.1.26 0.666
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.666
5ez7 FADProbable FAD-dependent oxidoreductase PA4991 / 0.665
5i39 FADL-amino acid deaminase / 0.665
2yqu FADDihydrolipoyl dehydrogenase / 0.664
1eje FMNProtein MTH_152 / 0.663
3ojw FADNADPH--cytochrome P450 reductase / 0.663
4ysh FADGlycine oxidase / 0.663
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.661
2apg FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.661
1rz1 FADPhenol 2-hydroxylase component B / 0.660
2gqw FADFerredoxin reductase / 0.660
4opt FDAConserved Archaeal protein / 0.660
2jae FADL-amino acid oxidase / 0.659
3icr FADCoenzyme A disulfide reductase / 0.659
3qfc FADNADPH--cytochrome P450 reductase / 0.659
4h4t FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.659
2igo FADPyranose 2-oxidase / 0.658
4opd FDAConserved Archaeal protein / 0.658
2jb1 FADL-amino acid oxidase / 0.657
3vqr FADPutative oxidoreductase / 0.657
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.656
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.656
2zbw FADFerredoxin--NADP reductase / 0.656
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.656
4y9u FADNADPH--cytochrome P450 reductase / 0.656
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.655
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.655
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.655
3ae4 FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.655
3l67 FMNXenobiotic reductase / 0.655
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.655
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.655
4h4x FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.655
1o97 FADElectron transfer flavoprotein subunit alpha / 0.654
1pox FADPyruvate oxidase 1.2.3.3 0.654
3znp FADD-amino-acid oxidase 1.4.3.3 0.653
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.653
4mok FADPyranose 2-oxidase / 0.653
1z6l FADPolyamine oxidase FMS1 / 0.651
2bab FADPutative aminooxidase / 0.651
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.651
5hxw FADL-amino acid deaminase / 0.651
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.650
4bk3 FADProbable salicylate monooxygenase / 0.650
4eqw FADCoenzyme A disulfide reductase / 0.650
4r3a RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.650