2.910 Å
X-ray
2010-02-04
| Name: | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial |
|---|---|---|
| ID: | SDHB_PIG | C560_PIG |
| AC: | Q007T0 | D0VWV4 |
| Organism: | Sus scrofa | |
| Reign: | Eukaryota | |
| TaxID: | 9823 | |
| EC Number: | 1.3.5.1 | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 41 % |
| C | 47 % |
| D | 12 % |
| B-Factor: | 66.602 |
|---|---|
| Number of residues: | 18 |
| Including | |
| Standard Amino Acids: | 17 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.186 | 2544.750 |
| % Hydrophobic | % Polar |
|---|---|
| 63.79 | 36.21 |
| According to VolSite | |

| HET Code: | N1M |
|---|---|
| Formula: | C8H8INO |
| Molecular weight: | 261.060 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 66.69 % |
| Polar Surface area: | 29.1 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 1 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 12.7165 | -25.9895 | 60.7376 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4 | CB | SER- 42 | 4.17 | 0 | Hydrophobic |
| C3 | CG1 | ILE- 43 | 4.15 | 0 | Hydrophobic |
| C5 | CG | ARG- 46 | 3.45 | 0 | Hydrophobic |
| O | OH | TYR- 91 | 2.65 | 160.49 | H-Bond (Protein Donor) |
| O | NE1 | TRP- 173 | 2.68 | 142.97 | H-Bond (Protein Donor) |
| C6 | CB | HIS- 216 | 4.14 | 0 | Hydrophobic |
| I | CD1 | ILE- 218 | 4.26 | 0 | Hydrophobic |
| C1 | CD1 | ILE- 218 | 3.65 | 0 | Hydrophobic |