2.910 Å
X-ray
2010-02-04
Name: | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial |
---|---|---|
ID: | SDHB_PIG | C560_PIG |
AC: | Q007T0 | D0VWV4 |
Organism: | Sus scrofa | |
Reign: | Eukaryota | |
TaxID: | 9823 | |
EC Number: | 1.3.5.1 | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 41 % |
C | 47 % |
D | 12 % |
B-Factor: | 66.602 |
---|---|
Number of residues: | 18 |
Including | |
Standard Amino Acids: | 17 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.186 | 2544.750 |
% Hydrophobic | % Polar |
---|---|
63.79 | 36.21 |
According to VolSite |
HET Code: | N1M |
---|---|
Formula: | C8H8INO |
Molecular weight: | 261.060 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.69 % |
Polar Surface area: | 29.1 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 1 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
12.7165 | -25.9895 | 60.7376 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4 | CB | SER- 42 | 4.17 | 0 | Hydrophobic |
C3 | CG1 | ILE- 43 | 4.15 | 0 | Hydrophobic |
C5 | CG | ARG- 46 | 3.45 | 0 | Hydrophobic |
O | OH | TYR- 91 | 2.65 | 160.49 | H-Bond (Protein Donor) |
O | NE1 | TRP- 173 | 2.68 | 142.97 | H-Bond (Protein Donor) |
C6 | CB | HIS- 216 | 4.14 | 0 | Hydrophobic |
I | CD1 | ILE- 218 | 4.26 | 0 | Hydrophobic |
C1 | CD1 | ILE- 218 | 3.65 | 0 | Hydrophobic |