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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2imp NAI Lactaldehyde dehydrogenase 1.2.1.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2imp NAILactaldehyde dehydrogenase 1.2.1.22 1.029
2j40 NAD1-pyrroline-5-carboxylate dehydrogenase / 0.787
4x2q NADRetinal dehydrogenase 2 1.2.1.36 0.785
2ehu NAD1-pyrroline-5-carboxylate dehydrogenase / 0.760
1o9j NADAldehyde dehydrogenase, cytosolic 1 1.2.1.3 0.755
2jg7 NADAntiquitin / 0.754
2eii NAD1-pyrroline-5-carboxylate dehydrogenase / 0.744
4i3w NADAldehyde dehydrogenase (NAD+) / 0.744
1t90 NADMalonate-semialdehyde dehydrogenase 1.2.1.27 0.739
4i8q NADPutative betaine aldehyde dehyrogenase / 0.739
4i3v NADAldehyde dehydrogenase (NAD+) / 0.738
2eit NAD1-pyrroline-5-carboxylate dehydrogenase / 0.737
4pxl NADAldehyde dehydrogenase3 / 0.737
4fr8 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.731
3iwj NADAminoaldehyde dehydrogenase / 0.730
2onp NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.726
3efv NADPutative succinate-semialdehyde dehydrogenase / 0.719
4f3x NADPutative aldehyde dehydrogenase / 0.716
3rhl NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.712
4pt0 NADAldehyde dehydrogenase / 0.708
1a4z NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.706
2bhp NAD1-pyrroline-5-carboxylate dehydrogenase / 0.706
4i9b NADPutative betaine aldehyde dehyrogenase / 0.704
4ihi NADProbable pyrroline-5-carboxylate dehydrogenase RocA / 0.702
4wb9 NAIRetinal dehydrogenase 1 1.2.1.36 0.702
1bxs NADRetinal dehydrogenase 1 1.2.1.36 0.701
4x4l NAIRetinal dehydrogenase 1 1.2.1.36 0.701
4zuk NADAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.701
1nzx NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.698
4i1w NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.696
1wnb NAIGamma-aminobutyraldehyde dehydrogenase 1.2.1.19 0.694
2j5n NAD1-pyrroline-5-carboxylate dehydrogenase / 0.694
3rhr NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.693
4h73 NDPAldehyde dehydrogenase / 0.690
2j6l NAIAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.689
4oe2 NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.689
4oe4 NADDelta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 1.2.1.88 0.684
2bja NAD1-pyrroline-5-carboxylate dehydrogenase / 0.682
3rhj NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.680
1o02 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.679
4nmj NAPAldehyde dehydrogenase / 0.675
4pz2 NADAldehyde dehydrogenase 2-6 / 0.674
3rho NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.672
1o01 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.671
4go2 TAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.668
2o2q NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.666
2o2r NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.665
1bi9 NADRetinal dehydrogenase 2 / 0.664
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.663
2ehq NAP1-pyrroline-5-carboxylate dehydrogenase / 0.662
3b4w NADAldehyde dehydrogenase family protein / 0.660
4itb NDPSuccinate-semialdehyde dehydrogenase / 0.660
4c3s NADAldehyde Dehydrogenase / 0.658
2qe0 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.656
2y8q ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.652
3n83 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.652
4zvy NADAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.652
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.651
4jdc NADProbable pyrroline-5-carboxylate dehydrogenase RocA / 0.651