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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ed4 FAD 4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 1.223
1rz0 FADPhenol 2-hydroxylase component B / 0.869
1rz1 FADPhenol 2-hydroxylase component B / 0.863
5cho FADFlavin reductase / 0.797
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.790
4f07 FADStyrene monooxygenase component 2 / 0.778
4l82 FMNUncharacterized protein / 0.725
3rh7 FMNUncharacterized protein / 0.710
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.705
1pkv RBFRiboflavin synthase 2.5.1.9 0.704
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.698
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.686
2igo FADPyranose 2-oxidase / 0.685
2tpr FADTrypanothione reductase 1.8.1.12 0.685
1usc FMNMonooxygenase / 0.684
3hjk FADVivid PAS protein VVD / 0.682
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.678
1typ FADTrypanothione reductase 1.8.1.12 0.677
2bn4 FADNADPH--cytochrome P450 reductase / 0.677
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.676
4jdr FADDihydrolipoyl dehydrogenase 1.8.1.4 0.676
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.673
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.672
1gvh FADFlavohemoprotein / 0.672
2yqu FADDihydrolipoyl dehydrogenase / 0.668
2z6c FMNPhototropin-1 2.7.11.1 0.668
3a3b RBFLumazine protein / 0.667
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.665
2a8x FADDihydrolipoyl dehydrogenase 1.8.1.4 0.665
3ept FDAPutative FAD-monooxygenase / 0.665
2wba FADTrypanothione reductase 1.8.1.12 0.664
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.664
3mzi FMNActivator of photopigment and puc expression / 0.664
3a6r FMNFMN-binding protein / 0.663
1fec FADTrypanothione reductase 1.8.1.12 0.662
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.662
2bf4 FADNADPH--cytochrome P450 reductase / 0.662
3vy2 FMNFMN-binding protein / 0.662
1feb FADTrypanothione reductase 1.8.1.12 0.661
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.660
4mok FADPyranose 2-oxidase / 0.660
1eje FMNProtein MTH_152 / 0.659
2eq7 FADDihydrolipoyl dehydrogenase / 0.659
2qae FADDihydrolipoyl dehydrogenase 1.8.1.4 0.658
3qe2 FADNADPH--cytochrome P450 reductase / 0.657
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.656
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.656
1tyt FADTrypanothione reductase 1.8.1.12 0.656
1yrx FMNAppA protein / 0.656
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.656
1d7y FADFerredoxin reductase / 0.655
2eq8 FADDihydrolipoyl dehydrogenase / 0.655
2gjn FMNNitronate monooxygenase 1.13.12.16 0.655
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.654
2cfy FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.653
2pr5 FMNBlue-light photoreceptor / 0.653
3crz FADFerredoxin--NADP+ reductase / 0.653
4b4d FADFerredoxin-NADP reductase / 0.653
1cqx FADFlavohemoprotein / 0.652
1wlk FMNFMN-binding protein / 0.652
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.651
1x0p FADTll0078 protein / 0.651
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.651
3bm1 FMNPutative NAD(P)H nitroreductase YdjA / 0.651
3pl8 FADPyranose 2-oxidase / 0.651