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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cea ADP ATP-dependent zinc metalloprotease FtsH

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2cea ADPATP-dependent zinc metalloprotease FtsH / 0.993
3d8b ADPFidgetin-like protein 1 3.6.4 0.778
4ww0 ADPATP-dependent zinc metalloprotease FtsH / 0.739
1in5 ADPHolliday junction ATP-dependent DNA helicase RuvB / 0.738
2ce7 ADPATP-dependent zinc metalloprotease FtsH / 0.728
4ww4 ADPRuvB-like helicase / 0.725
3cf0 ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.711
4d81 ADPAAA ATPase, central domain protein / 0.708
3r9i ADPSeptum site-determining protein MinD / 0.707
1s3s ADPTransitional endoplasmic reticulum ATPase 3.6.4.6 0.703
4ko8 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.695
3hu1 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.694
4hse ADPChaperone protein ClpB / 0.688
3k1j ADPATP-dependent protease Lon / 0.684
1ht2 ADPATP-dependent protease ATPase subunit HslU / 0.682
2c96 ATPPsp operon transcriptional activator / 0.682
2dr3 ADPUPF0273 protein PH0284 / 0.680
1gwn GTPRho-related GTP-binding protein RhoE / 0.679
4gp6 ADPMetallophosphoesterase / 0.679
1gia GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.678
3hu2 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.677
3tif ADPUncharacterized ABC transporter ATP-binding protein MJ0796 / 0.673
2gvd GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.670
4l16 ADPFidgetin-like protein 1 3.6.4 0.670
1u0h GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.666
1cxz GSPTransforming protein RhoA / 0.664
4xoi GTPTransforming protein RhoA / 0.664
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.663
2v7q ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.661
4bzq ADPBifunctional enzyme CysN/CysC 2.7.1.25 0.660
4a1z ADPKinesin-like protein KIF11 / 0.659
1b7t ADPMyosin heavy chain, striated muscle / 0.657
2gil GTPRas-related protein Rab-6A / 0.656
1lot ATPActin, alpha skeletal muscle / 0.655
3zlm ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.655
3eg5 GNPCell division control protein 42 homolog / 0.654
4kln AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.654
4ymu ATPABC-type polar amino acid transport system, ATPase component / 0.652
2jj2 ADPATP synthase subunit alpha, mitochondrial / 0.651
2jj2 ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.651
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.650
3mhy ATPNitrogen regulatory protein P-II 1 / 0.650