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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x0p FAD Tll0078 protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1x0p FADTll0078 protein / 1.163
2hfo FMNActivator of photopigment and puc expression / 0.839
3gfx FMNUncharacterized protein / 0.836
2byc FMNBlue-light receptor of the BLUF-family / 0.826
3gg1 FMNUncharacterized protein / 0.820
3gfz FMNUncharacterized protein / 0.819
3gfy FMNUncharacterized protein / 0.802
2hfn FMNActivator of photopigment and puc expression / 0.798
1yrx FMNAppA protein / 0.791
3gg0 FMNUncharacterized protein / 0.787
4yus FMNFamily 3 adenylate cyclase / 0.785
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.784
4hh0 FMNAppA protein / 0.775
2iyi FMNAppA, antirepressor of ppsR, sensor of blue light / 0.764
3mzi FMNActivator of photopigment and puc expression / 0.747
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.739
3cls FADElectron transfer flavoprotein subunit alpha / 0.728
2gj3 FADNitrogen fixation regulatory protein 2.7.13.3 0.713
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.712
4ttc FMNIodotyrosine deiodinase 1 / 0.710
1ryi FADGlycine oxidase 1.4.3.19 0.708
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.706
1ng3 FADGlycine oxidase 1.4.3.19 0.705
1ng4 FADGlycine oxidase 1.4.3.19 0.705
3clr FADElectron transfer flavoprotein subunit alpha / 0.702
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.700
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.697
1nb9 RBFRiboflavin kinase 2.7.1.26 0.696
2du8 FADD-amino-acid oxidase 1.4.3.3 0.696
3ea4 FABAcetolactate synthase, chloroplastic 2.2.1.6 0.690
3if9 FADGlycine oxidase 1.4.3.19 0.690
4hj4 FMNLOV protein / 0.690
3cuk FADD-amino-acid oxidase 1.4.3.3 0.689
1kif FADD-amino-acid oxidase 1.4.3.3 0.688
1wli FMNFMN-binding protein / 0.688
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.687
5efw FMNNPH1-1 / 0.687
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.684
2qcu FADAerobic glycerol-3-phosphate dehydrogenase 1.1.5.3 0.682
4opl FDAConserved Archaeal protein / 0.681
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.680
4tmb FMNOld yellow enzyme / 0.679
1rz1 FADPhenol 2-hydroxylase component B / 0.675
2b9y FADPutative aminooxidase / 0.675
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.672
2e1m FADL-glutamate oxidase / 0.672
5i39 FADL-amino acid deaminase / 0.672
1q1r FADPutidaredoxin reductase 1.18.1.5 0.669
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.667
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.666
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.665
2o12 FMNChorismate synthase / 0.664
2b9w FADPutative aminooxidase / 0.663
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.663
3k4n FADPyranose 2-oxidase / 0.662
1zrq FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.661
4cnk FADL-amino acid oxidase / 0.661
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.660
3aeb FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.659
1rz0 FADPhenol 2-hydroxylase component B / 0.658
2gqf FADUncharacterized protein HI_0933 / 0.658
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.657
3eo8 FMNPutative nitroreductase / 0.657
4fwe FADLysine-specific histone demethylase 1B 1 0.657
4nmb FADBifunctional protein PutA / 0.657
1b4v FADCholesterol oxidase 1.1.3.6 0.656
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.656
4bk3 FADProbable salicylate monooxygenase / 0.656
4f07 FADStyrene monooxygenase component 2 / 0.656
4gu5 FADCryptochrome-1 / 0.656
1wlk FMNFMN-binding protein / 0.655
4em3 FADCoenzyme A disulfide reductase / 0.655
4hj3 FMNLOV protein / 0.655
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.654
3lsh FADPyranose 2-oxidase / 0.654
4m8h R4MRetinoic acid receptor RXR-alpha / 0.653
2gr3 FADFerredoxin reductase / 0.652
2v3a FADRubredoxin-NAD(+) reductase 1.18.1.1 0.652
3w8w FADPutative FAD-dependent oxygenase EncM / 0.652
1c0l FADD-amino-acid oxidase 1.4.3.3 0.651
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.651
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.651
4dja FAD(6-4) photolyase / 0.651
4kuo RBFPutative blue-light photoreceptor / 0.651
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.650
3rha FDAPutrescine oxidase / 0.650
5er0 FADUncharacterized NAD(FAD)-dependent dehydrogenase / 0.650