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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1udc UFM UDP-glucose 4-epimerase 5.1.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 1.276
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 0.956
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 0.946
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.928
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.923
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.923
1ek6 UPGUDP-glucose 4-epimerase / 0.900
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 0.896
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.895
1i3m UD1UDP-glucose 4-epimerase / 0.892
1i3n UD1UDP-glucose 4-epimerase / 0.882
1i3l GDUUDP-glucose 4-epimerase / 0.857
1i3k UPGUDP-glucose 4-epimerase / 0.852
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.842
3enk UPGUDP-glucose 4-epimerase / 0.816
1hzj UD1UDP-glucose 4-epimerase / 0.801
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.793
1lrk UD1UDP-glucose 4-epimerase 5.1.3.2 0.780
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.779
4zrn UPGUDP-glucose 4-epimerase, putative / 0.779
1lrj UD1UDP-glucose 4-epimerase 5.1.3.2 0.734
1sb8 UD2WbpP / 0.710
1lrl UPGUDP-glucose 4-epimerase 5.1.3.2 0.703
1t2a GDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.656
5ios FADFlavin-dependent thymidylate synthase 2.1.1.148 0.656
3hdy GDUUDP-galactopyranose mutase / 0.655
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.655
2c5e GDDGDP-mannose 3,5-epimerase 5.1.3.18 0.650