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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1t88 CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.830
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.812
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.804
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.800
2zui CAMCamphor 5-monooxygenase 1.14.15.1 0.799
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.784
1iwj CAMCamphor 5-monooxygenase 1.14.15.1 0.784
4l49 CAMCamphor 5-monooxygenase 1.14.15.1 0.784
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.782
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.782
5cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.778
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.777
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.776
2zaw CAMCamphor 5-monooxygenase 1.14.15.1 0.774
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.772
2qbl CAMCamphor 5-monooxygenase 1.14.15.1 0.769
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.765
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.763
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.756
2qbo CAMCamphor 5-monooxygenase 1.14.15.1 0.756
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.749
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.749
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.740
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.710
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.710
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.710
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.710
3lxi CAMCytochrome P450 / 0.701
4c9p CAMCytochrome P450 / 0.695
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.693
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.692
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.686
4cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.684
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.682
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.681
6cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.681
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.670
4c9o CAMCytochrome P450 / 0.669
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.668
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660