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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1krh FAD Benzoate 1,2-dioxygenase electron transfer component 1.18.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 1.364
1cqx FADFlavohemoprotein / 1.058
3fpk FADFerredoxin-NADP reductase / 1.030
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.003
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.000
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.972
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.940
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.921
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.919
3qe2 FADNADPH--cytochrome P450 reductase / 0.907
3qfs FADNADPH--cytochrome P450 reductase / 0.896
1ja1 FADNADPH--cytochrome P450 reductase / 0.893
3qfc FADNADPH--cytochrome P450 reductase / 0.888
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.886
4y9r FADNADPH--cytochrome P450 reductase / 0.879
4yao FADNADPH--cytochrome P450 reductase / 0.879
3ojw FADNADPH--cytochrome P450 reductase / 0.878
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.874
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.872
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.869
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.866
1tll FADNitric oxide synthase, brain 1.14.13.39 0.866
4yau FADNADPH--cytochrome P450 reductase / 0.866
2bn4 FADNADPH--cytochrome P450 reductase / 0.863
1amo FADNADPH--cytochrome P450 reductase / 0.860
4fk8 FADFerredoxin--NADP reductase / 0.858
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.856
3qfr FADNADPH--cytochrome P450 reductase / 0.855
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.854
2qdx FADFerredoxin--NADP+ reductase / 0.851
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.847
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.843
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.840
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.840
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.834
2rc5 FADFerredoxin--NADP reductase / 0.831
1gvh FADFlavohemoprotein / 0.828
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.827
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.821
2rc6 FADFerredoxin--NADP reductase / 0.821
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.820
4yaf FADNADPH--cytochrome P450 reductase / 0.820
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.816
2vnj FADNADPH:ferredoxin reductase / 0.814
2bgj FADNADPH:ferredoxin reductase / 0.809
4k1x FADNADPH:ferredoxin reductase / 0.809
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.805
4y7c FADNADPH--cytochrome P450 reductase / 0.805
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.804
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.800
4b4d FADFerredoxin-NADP reductase / 0.800
4y9u FADNADPH--cytochrome P450 reductase / 0.799
3ojx FADNADPH--cytochrome P450 reductase / 0.797
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.790
3vo2 FADFerredoxin--NADP reductase / 0.788
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.787
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.785
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.783
1a8p FADFerredoxin--NADP reductase / 0.782
1que FADFerredoxin--NADP reductase 1.18.1.2 0.780
2bf4 FADNADPH--cytochrome P450 reductase / 0.778
2bgi FADNADPH:ferredoxin reductase / 0.778
2bpo FADNADPH--cytochrome P450 reductase / 0.778
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.770
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.769
2vnk FADNADPH:ferredoxin reductase / 0.769
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.764
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.764
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.763
2eix FADNADH-cytochrome b5 reductase / 0.760
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.756
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.754
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.754
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.754
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.750
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.749
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.748
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.748
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.747
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.746
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.746
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.743
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.741
1sm4 FADFerredoxin--NADP reductase / 0.740
2gpj FADSiderophore-interacting protein / 0.733
3w5u FADFerredoxin / 0.733
1gaw FADFerredoxin / 0.730
1gaq FADFerredoxin / 0.727
1ja0 FADNADPH--cytochrome P450 reductase / 0.726
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.725
3hjk FADVivid PAS protein VVD / 0.719
2pia FMNPhthalate dioxygenase reductase / 0.713
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.713
3qft FADNADPH--cytochrome P450 reductase / 0.712
3a3b RBFLumazine protein / 0.709
2iml FMNUncharacterized protein / 0.705
1pkv RBFRiboflavin synthase 2.5.1.9 0.704
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.704
4eet FMNPhototropin-2 2.7.11.1 0.702
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.698
2hq9 FADMll6688 protein / 0.697
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.696
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.694
3lsh FADPyranose 2-oxidase / 0.693
4hj3 FMNLOV protein / 0.692
3sfd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.691
4rhe FMNFlavin prenyltransferase UbiX / 0.690
5buk FADFADH2-dependent halogenase / 0.690
2igo FADPyranose 2-oxidase / 0.685
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.684
3pl8 FADPyranose 2-oxidase / 0.683
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.679
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.677
5cho FADFlavin reductase / 0.677
3bnk FMNFlavoredoxin / 0.676
4mok FADPyranose 2-oxidase / 0.675
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.674
3cox FADCholesterol oxidase 1.1.3.6 0.671
2nr4 FMNConserved protein / 0.670
3in6 FMNUncharacterized protein / 0.670
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.669
5j3w FMNSensory box protein / 0.669
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.668
4f07 FADStyrene monooxygenase component 2 / 0.667
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.666
4hj4 FMNLOV protein / 0.666
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.665
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.662
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.662
3k4c FADPyranose 2-oxidase / 0.661
4iil RBFMembrane lipoprotein TpN38(b) / 0.661
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.661
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.660
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.660
4x9n FADUncharacterized protein MG039 homolog / 0.660
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.658
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.658
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.657
1j9z FADNADPH--cytochrome P450 reductase / 0.657
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.657
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.655
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.654
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.654
3ept FDAPutative FAD-monooxygenase / 0.654
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.654
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.654
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.653
1t6z RBFRiboflavin biosynthesis protein / 0.653
4ybn FADFlavin-nucleotide-binding protein / 0.653
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.652
1tj0 FADBifunctional protein PutA 1.5.5.2 0.651
1usc FMNMonooxygenase / 0.650
2ptf FMNUncharacterized protein MTH_863 / 0.650
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.650
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.650