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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ib0 FAD NADH-cytochrome b5 reductase 3 1.6.2.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.402
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.136
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.980
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.958
2eix FADNADH-cytochrome b5 reductase / 0.904
1cqx FADFlavohemoprotein / 0.833
1a8p FADFerredoxin--NADP reductase / 0.829
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.829
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.812
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.802
1amo FADNADPH--cytochrome P450 reductase / 0.801
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.798
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.795
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.791
3fpk FADFerredoxin-NADP reductase / 0.790
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.789
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.779
3qe2 FADNADPH--cytochrome P450 reductase / 0.777
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.774
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.764
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.759
4y9r FADNADPH--cytochrome P450 reductase / 0.757
3ojx FADNADPH--cytochrome P450 reductase / 0.755
3qfc FADNADPH--cytochrome P450 reductase / 0.755
4y7c FADNADPH--cytochrome P450 reductase / 0.755
3qfs FADNADPH--cytochrome P450 reductase / 0.754
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.753
3qft FADNADPH--cytochrome P450 reductase / 0.751
1ja0 FADNADPH--cytochrome P450 reductase / 0.748
2hq9 FADMll6688 protein / 0.748
1sm4 FADFerredoxin--NADP reductase / 0.747
4y9u FADNADPH--cytochrome P450 reductase / 0.746
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.745
3w5u FADFerredoxin / 0.739
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.735
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.735
2bpo FADNADPH--cytochrome P450 reductase / 0.733
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.725
4k1x FADNADPH:ferredoxin reductase / 0.724
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.721
1gvh FADFlavohemoprotein / 0.719
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.719
3vo2 FADFerredoxin--NADP reductase / 0.717
5cho FADFlavin reductase / 0.716
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.714
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.712
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.711
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.710
1tll FADNitric oxide synthase, brain 1.14.13.39 0.710
4yao FADNADPH--cytochrome P450 reductase / 0.710
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.709
4f07 FADStyrene monooxygenase component 2 / 0.709
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.707
1gaw FADFerredoxin / 0.707
1j9z FADNADPH--cytochrome P450 reductase / 0.707
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.704
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.703
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.702
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.700
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.699
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.699
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.699
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.698
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.698
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.697
2bn4 FADNADPH--cytochrome P450 reductase / 0.695
1que FADFerredoxin--NADP reductase 1.18.1.2 0.694
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.693
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.692
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.690
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.690
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.689
1ger FADGlutathione reductase 1.8.1.7 0.686
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.686
3ept FDAPutative FAD-monooxygenase / 0.685
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.684
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.684
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.684
4opc FDAConserved Archaeal protein / 0.684
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.682
2bf4 FADNADPH--cytochrome P450 reductase / 0.681
4yaf FADNADPH--cytochrome P450 reductase / 0.677
2e83 FMNFMN-binding protein / 0.676
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.676
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.675
2fzm FADBifunctional protein PutA 1.5.5.2 0.674
3rh7 FMNUncharacterized protein / 0.674
2wes FADTryptophan 5-halogenase / 0.673
1gaq FADFerredoxin / 0.672
2rc5 FADFerredoxin--NADP reductase / 0.671
3qfa FADThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.671
4nmd FDABifunctional protein PutA / 0.671
1fea FADTrypanothione reductase 1.8.1.12 0.670
2wp5 FADTrypanothione reductase / 0.670
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.669
4fk8 FADFerredoxin--NADP reductase / 0.667
2vnj FADNADPH:ferredoxin reductase / 0.666
3nix FADFlavoprotein/dehydrogenase / 0.666
3ojw FADNADPH--cytochrome P450 reductase / 0.666
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.666
2wow FADTrypanothione reductase / 0.665
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.665
4d03 FADPhenylacetone monooxygenase 1.14.13.92 0.664
2rc6 FADFerredoxin--NADP reductase / 0.663
4j57 FADThioredoxin reductase 2 1.8.1.9 0.663
2gpj FADSiderophore-interacting protein / 0.662
4yau FADNADPH--cytochrome P450 reductase / 0.661
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.660
3in6 FMNUncharacterized protein / 0.659
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.658
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.657
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.656
1get FADGlutathione reductase 1.8.1.7 0.655
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.654
3dgh FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.654
4ybn FADFlavin-nucleotide-binding protein / 0.654
3crz FADFerredoxin--NADP+ reductase / 0.653
2bgi FADNADPH:ferredoxin reductase / 0.652
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.652
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.651
2gjl FMNNitronate monooxygenase 1.13.12.16 0.651
3p4t FAOPutative acyl-CoA dehydrogenase / 0.651
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.650
3dh9 FADThioredoxin reductase 1, mitochondrial 1.8.1.9 0.650