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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i3n UD1 UDP-glucose 4-epimerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i3n UD1UDP-glucose 4-epimerase / 1.167
1i3m UD1UDP-glucose 4-epimerase / 1.141
1i3l GDUUDP-glucose 4-epimerase / 1.058
1ek6 UPGUDP-glucose 4-epimerase / 0.952
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.952
1hzj UD1UDP-glucose 4-epimerase / 0.944
1i3k UPGUDP-glucose 4-epimerase / 0.943
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.915
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 0.915
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 0.913
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.896
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 0.884
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.882
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.864
3enk UPGUDP-glucose 4-epimerase / 0.863
1lrk UD1UDP-glucose 4-epimerase 5.1.3.2 0.850
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.819
4zrn UPGUDP-glucose 4-epimerase, putative / 0.779
1lrl UPGUDP-glucose 4-epimerase 5.1.3.2 0.755
1lrj UD1UDP-glucose 4-epimerase 5.1.3.2 0.737
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.720
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.701
1i2c UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.700
1qrr UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.688
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.668
2pk3 GDDGDP-6-deoxy-D-mannose reductase / 0.665
5fuv THMThymidine kinase, putative / 0.660
4avl TMPPolymerase acidic protein / 0.656
4lv8 ADPRhoptry protein 5 C / 0.653