1.870 Å
X-ray
2012-05-28
Name: | Polymerase acidic protein |
---|---|
ID: | C3W5S0_I09A0 |
AC: | C3W5S0 |
Organism: | Influenza A virus |
Reign: | Viruses |
TaxID: | 641501 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 100 % |
B-Factor: | 35.914 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.196 | 563.625 |
% Hydrophobic | % Polar |
---|---|
34.73 | 65.27 |
According to VolSite |
HET Code: | TMP |
---|---|
Formula: | C10H13N2O8P |
Molecular weight: | 320.193 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 51.39 % |
Polar Surface area: | 161.1 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
56.8434 | 85.0525 | -16.209 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CE2 | TYR- 24 | 4.12 | 0 | Hydrophobic |
C5M | CE1 | TYR- 24 | 3.83 | 0 | Hydrophobic |
O2 | OE1 | GLU- 26 | 3 | 168.39 | H-Bond (Protein Donor) |
C4' | CG1 | ILE- 38 | 3.99 | 0 | Hydrophobic |
C1' | CG1 | ILE- 38 | 3.89 | 0 | Hydrophobic |
C5' | CB | HIS- 41 | 4.29 | 0 | Hydrophobic |
O1P | NZ | LYS- 134 | 2.74 | 156.44 | H-Bond (Protein Donor) |
O1P | NZ | LYS- 134 | 2.74 | 0 | Ionic (Protein Cationic) |
O3P | NZ | LYS- 134 | 3.03 | 0 | Ionic (Protein Cationic) |
O1P | MN | MN- 1198 | 2.19 | 0 | Metal Acceptor |
O2P | MN | MN- 1198 | 2.35 | 0 | Metal Acceptor |
O2P | MN | MN- 1199 | 1.98 | 0 | Metal Acceptor |
N3 | O | HOH- 2009 | 2.79 | 174.09 | H-Bond (Ligand Donor) |
O1P | O | HOH- 2051 | 3.03 | 158.77 | H-Bond (Protein Donor) |