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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i3l GDU UDP-glucose 4-epimerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i3l GDUUDP-glucose 4-epimerase / 1.069
1i3n UD1UDP-glucose 4-epimerase / 1.058
1i3m UD1UDP-glucose 4-epimerase / 1.053
1hzj UD1UDP-glucose 4-epimerase / 0.972
1ek6 UPGUDP-glucose 4-epimerase / 0.953
1i3k UPGUDP-glucose 4-epimerase / 0.944
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.941
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 0.919
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 0.919
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 0.915
3enk UPGUDP-glucose 4-epimerase / 0.910
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.887
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.884
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 0.882
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.880
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.857
1lrk UD1UDP-glucose 4-epimerase 5.1.3.2 0.854
4zrn UPGUDP-glucose 4-epimerase, putative / 0.785
1lrj UD1UDP-glucose 4-epimerase 5.1.3.2 0.750
1lrl UPGUDP-glucose 4-epimerase 5.1.3.2 0.744
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.709
4avl TMPPolymerase acidic protein / 0.669
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.668
2b8t THMThymidine kinase / 0.668
5fuv THMThymidine kinase, putative / 0.667
2cmk CDPCytidylate kinase 2.7.4.25 0.659
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.659
4lv5 ADPRhoptry protein 5B / 0.658