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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i3k UPG UDP-glucose 4-epimerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i3k UPGUDP-glucose 4-epimerase / 1.121
1ek6 UPGUDP-glucose 4-epimerase / 1.084
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 1.030
1kvu UPGUDP-glucose 4-epimerase 5.1.3.2 1.009
1a9y UPGUDP-glucose 4-epimerase 5.1.3.2 1.008
1kvt UPGUDP-glucose 4-epimerase 5.1.3.2 0.973
1hzj UD1UDP-glucose 4-epimerase / 0.970
1i3m UD1UDP-glucose 4-epimerase / 0.956
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.946
3enk UPGUDP-glucose 4-epimerase / 0.945
1i3l GDUUDP-glucose 4-epimerase / 0.944
1i3n UD1UDP-glucose 4-epimerase / 0.943
1udb UFGUDP-glucose 4-epimerase 5.1.3.2 0.921
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.919
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.872
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.857
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.852
2udp UPPUDP-glucose 4-epimerase 5.1.3.2 0.826
4zrn UPGUDP-glucose 4-epimerase, putative / 0.815
1lrk UD1UDP-glucose 4-epimerase 5.1.3.2 0.774
1lrj UD1UDP-glucose 4-epimerase 5.1.3.2 0.746
1i2c UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.730
1z45 UPGBifunctional protein GAL10 5.1.3.2 0.717
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.706
2c5e GDDGDP-mannose 3,5-epimerase 5.1.3.18 0.699
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.685
2gn9 UPGUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.677
1wvg CXYCDP-glucose 4,6-dehydratase 4.2.1.45 0.672
1sb8 UD2WbpP / 0.671
5fuw THMThymidine kinase, putative / 0.668
2gn4 UD1UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.658
4lv5 ADPRhoptry protein 5B / 0.652
4avl TMPPolymerase acidic protein / 0.651
1fxo TMPGlucose-1-phosphate thymidylyltransferase / 0.650
5fuv THMThymidine kinase, putative / 0.650