Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1hk4 T44 Serum albumin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1hk4 T44Serum albumin / 0.997
1g6o ADPCag alpha / 0.744
1wet GUNHTH-type transcriptional repressor PurR / 0.744
1xxj UNCUricase 1.7.3.3 0.744
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.744
2jey HLOAcetylcholinesterase 3.1.1.7 0.744
3f8p NADNADH oxidase/thioredoxin reductase / 0.744
3f8r NAPNADH oxidase/thioredoxin reductase / 0.744
3wwm ADP[LysW]-aminoadipate kinase / 0.744
3ypi PGHTriosephosphate isomerase 5.3.1.1 0.744
4a8m ATPRNA-directed RNA polymerase 2.7.7.48 0.744
4e5l DBHPolymerase acidic protein / 0.744
1hk5 T44Serum albumin / 0.721
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
2xtn GTPGTPase IMAP family member 2 / 0.660
3vp6 HLDGlutamate decarboxylase 1 4.1.1.15 0.660
4uxj TTPThymidine kinase / 0.660