2.800 Å
X-ray
2014-06-21
Name: | [LysW]-aminoadipate kinase |
---|---|
ID: | ARBL_THET2 |
AC: | O50147 |
Organism: | Thermus thermophilus |
Reign: | Bacteria |
TaxID: | 262724 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 73.799 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.209 | 563.625 |
% Hydrophobic | % Polar |
---|---|
34.73 | 65.27 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 35.86 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
10.8306 | 5.26489 | 20.4241 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2B | NZ | LYS- 5 | 2.99 | 158.58 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 5 | 2.99 | 0 | Ionic (Protein Cationic) |
O1A | N | GLY- 8 | 3.26 | 162.63 | H-Bond (Protein Donor) |
O3A | N | GLY- 8 | 3.1 | 130.29 | H-Bond (Protein Donor) |
O3B | N | GLY- 37 | 2.75 | 178.5 | H-Bond (Protein Donor) |
O3B | N | SER- 38 | 2.94 | 125.79 | H-Bond (Protein Donor) |
O3B | OG | SER- 38 | 3.22 | 145.39 | H-Bond (Protein Donor) |
O2A | O | HOH- 410 | 3.18 | 179.97 | H-Bond (Protein Donor) |