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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wwm ADP [LysW]-aminoadipate kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wwm ADP[LysW]-aminoadipate kinase / 0.762
1eyn 2ANUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.744
1gy3 ATPCyclin-dependent kinase 2 2.7.11.22 0.744
1hk4 T44Serum albumin / 0.744
1vrq FONSubunit alpha of sarocosine oxidase / 0.744
2xf3 J01Uncharacterized protein / 0.744
3cz0 9ODPheromone-binding protein ASP1 / 0.744
3fo7 IMNPhospholipase A2 VRV-PL-VIIIa / 0.744
3nfa CBJGag-Pol polyprotein / 0.744
3ngq 1PSCCR4-NOT transcription complex subunit 6-like 3.1.13.4 0.744
3nks ACJProtoporphyrinogen oxidase 1.3.3.4 0.744
4awg CI3Polymerase acidic protein / 0.744
4b6u M7GEukaryotic translation initiation factor 4E type 3 / 0.744
4c1f X8ZMetallo-beta-lactamase type 2 / 0.744
4dsb A8SAbscisic acid receptor PYL3 / 0.744
4eil CB3Bifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.744
4iqq D16Thymidylate synthase / 0.744
4ivo ACJProtoporphyrinogen oxidase 1.3.3.4 0.744
4kla CHDFerrochelatase, mitochondrial 4.99.1.1 0.744
4ne0 ZZUHydroxylase / 0.744
5dby DIFSerum albumin / 0.744
5dby NPSSerum albumin / 0.744
1diu BDMDihydrofolate reductase 1.5.1.3 0.660
1juj LYAThymidylate synthase 2.1.1.45 0.660
1rml NTSFibroblast growth factor 1 / 0.660