2.600 Å
X-ray
2012-06-03
| Name: | Polymerase acidic protein |
|---|---|
| ID: | C3W5S0_I09A0 |
| AC: | C3W5S0 |
| Organism: | Influenza A virus |
| Reign: | Viruses |
| TaxID: | 641501 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 30.870 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.479 | 796.500 |
| % Hydrophobic | % Polar |
|---|---|
| 42.37 | 57.63 |
| According to VolSite | |

| HET Code: | CI3 |
|---|---|
| Formula: | C23H24ClNO4 |
| Molecular weight: | 413.894 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.22 % |
| Polar Surface area: | 81.87 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| -4.34862 | -24.9617 | 51.8308 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CEB | CB | ALA- 20 | 3.53 | 0 | Hydrophobic |
| CL | CB | ALA- 20 | 3.5 | 0 | Hydrophobic |
| CO | CD2 | TYR- 24 | 4.49 | 0 | Hydrophobic |
| CK | CZ | TYR- 24 | 3.94 | 0 | Hydrophobic |
| CE2 | CB | TYR- 24 | 3.87 | 0 | Hydrophobic |
| CL | CG2 | ILE- 38 | 3.74 | 0 | Hydrophobic |
| CL | CG | LEU- 42 | 4.32 | 0 | Hydrophobic |
| CEA | CG | GLU- 80 | 4.04 | 0 | Hydrophobic |
| CE1 | CG | ARG- 84 | 4.27 | 0 | Hydrophobic |
| CD1 | CD1 | LEU- 106 | 3.6 | 0 | Hydrophobic |
| O14 | OD2 | ASP- 108 | 2.97 | 146.58 | H-Bond (Ligand Donor) |
| OAN | NZ | LYS- 134 | 3.97 | 0 | Ionic (Protein Cationic) |
| O14 | MN | MN- 901 | 2.3 | 0 | Metal Acceptor |
| OAO | MN | MN- 901 | 2.14 | 0 | Metal Acceptor |
| O13 | MN | MN- 902 | 2.07 | 0 | Metal Acceptor |
| O14 | MN | MN- 902 | 2.14 | 0 | Metal Acceptor |