2.200 Å
X-ray
2005-04-27
Name: | Subunit alpha of sarocosine oxidase |
---|---|
ID: | Q50LF0_9CORY |
AC: | Q50LF0 |
Organism: | Corynebacterium sp. U-96 |
Reign: | Bacteria |
TaxID: | 31944 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 33.823 |
---|---|
Number of residues: | 39 |
Including | |
Standard Amino Acids: | 38 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.774 | 1738.125 |
% Hydrophobic | % Polar |
---|---|
56.31 | 43.69 |
According to VolSite |
HET Code: | FON |
---|---|
Formula: | C20H21N7O7 |
Molecular weight: | 471.423 g/mol |
DrugBank ID: | DB03256 |
Buried Surface Area: | 55.64 % |
Polar Surface area: | 221.2 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 12 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
-26.7639 | 50.1544 | -0.106941 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C9 | CE1 | TYR- 663 | 4.07 | 0 | Hydrophobic |
C15 | CD1 | TYR- 663 | 2.92 | 0 | Hydrophobic |
C11 | CB | TYR- 663 | 4.21 | 0 | Hydrophobic |
C13 | CG2 | VAL- 678 | 3.91 | 0 | Hydrophobic |
N8 | O | THR- 691 | 3.23 | 163.9 | H-Bond (Ligand Donor) |
C13 | CG2 | ILE- 774 | 4.43 | 0 | Hydrophobic |
C9 | CE1 | PHE- 776 | 4.26 | 0 | Hydrophobic |
NA2 | OE1 | GLU- 783 | 2.72 | 141.24 | H-Bond (Ligand Donor) |
N3 | OE1 | GLU- 783 | 3.36 | 124.36 | H-Bond (Ligand Donor) |
N3 | OE2 | GLU- 783 | 2.7 | 139.93 | H-Bond (Ligand Donor) |
OE2 | NZ | LYS- 822 | 3.84 | 0 | Ionic (Protein Cationic) |
CB | CE1 | PHE- 824 | 4.22 | 0 | Hydrophobic |
CG | CZ | PHE- 824 | 3.93 | 0 | Hydrophobic |