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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gaw FAD Ferredoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gaw FADFerredoxin / 1.347
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.270
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.268
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.263
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.245
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.242
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.230
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.229
3vo2 FADFerredoxin--NADP reductase / 1.229
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.223
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.220
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.215
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.205
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.203
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.200
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.194
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.190
1que FADFerredoxin--NADP reductase 1.18.1.2 1.183
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.179
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.174
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.172
3w5u FADFerredoxin / 1.171
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.168
1gaq FADFerredoxin / 1.163
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.159
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.158
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.157
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.153
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.144
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.143
1sm4 FADFerredoxin--NADP reductase / 1.140
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.138
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.123
2rc6 FADFerredoxin--NADP reductase / 1.120
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.112
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.112
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.110
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.107
2rc5 FADFerredoxin--NADP reductase / 1.087
1f20 FADNitric oxide synthase, brain 1.14.13.39 1.048
3ojw FADNADPH--cytochrome P450 reductase / 1.034
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.024
1ja1 FADNADPH--cytochrome P450 reductase / 1.009
4yaf FADNADPH--cytochrome P450 reductase / 0.996
1tll FADNitric oxide synthase, brain 1.14.13.39 0.992
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.968
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.958
4yau FADNADPH--cytochrome P450 reductase / 0.953
3qfs FADNADPH--cytochrome P450 reductase / 0.947
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.943
1amo FADNADPH--cytochrome P450 reductase / 0.940
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.936
1j9z FADNADPH--cytochrome P450 reductase / 0.933
3qfr FADNADPH--cytochrome P450 reductase / 0.925
1cqx FADFlavohemoprotein / 0.916
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.906
1ja0 FADNADPH--cytochrome P450 reductase / 0.904
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.903
3qe2 FADNADPH--cytochrome P450 reductase / 0.895
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.890
3qft FADNADPH--cytochrome P450 reductase / 0.883
3ojx FADNADPH--cytochrome P450 reductase / 0.872
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.865
4yao FADNADPH--cytochrome P450 reductase / 0.865
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.863
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.852
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.850
3qfc FADNADPH--cytochrome P450 reductase / 0.844
1gvh FADFlavohemoprotein / 0.840
2pia FMNPhthalate dioxygenase reductase / 0.838
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.816
3fpk FADFerredoxin-NADP reductase / 0.808
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.806
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.804
4y7c FADNADPH--cytochrome P450 reductase / 0.788
2eix FADNADH-cytochrome b5 reductase / 0.785
4y9u FADNADPH--cytochrome P450 reductase / 0.784
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.769
2gpj FADSiderophore-interacting protein / 0.766
2bn4 FADNADPH--cytochrome P450 reductase / 0.765
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.757
4y9r FADNADPH--cytochrome P450 reductase / 0.755
2bf4 FADNADPH--cytochrome P450 reductase / 0.751
4k1x FADNADPH:ferredoxin reductase / 0.738
3in6 FMNUncharacterized protein / 0.737
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.730
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.717
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.717
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.716
2ptf FMNUncharacterized protein MTH_863 / 0.716
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.707
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.705
1wlk FMNFMN-binding protein / 0.702
2vnh FADNADPH:ferredoxin reductase / 0.700
5j60 FADThioredoxin reductase / 0.695
3q9t FAYUncharacterized protein / 0.692
3hdy FDAUDP-galactopyranose mutase / 0.684
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.683
4ybn FADFlavin-nucleotide-binding protein / 0.681
2igo FADPyranose 2-oxidase / 0.680
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.680
4eer FMNPhototropin-2 2.7.11.1 0.678
3a3b RBFLumazine protein / 0.677
2wes FADTryptophan 5-halogenase / 0.676
3k4c FADPyranose 2-oxidase / 0.676
3t37 FADPyridoxine 4-oxidase / 0.674
5hsa FASAlcohol oxidase 1 1.1.3.13 0.674
2nr4 FMNConserved protein / 0.673
4mo2 FADUDP-galactopyranose mutase / 0.673
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.673
2aqj FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.671
4u8m FDAUDP-galactopyranose mutase / 0.671
2vnk FADNADPH:ferredoxin reductase / 0.670
3a6q FMNFMN-binding protein / 0.670
3e4v FMNUncharacterized protein / 0.670
3vy2 FMNFMN-binding protein / 0.670
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.665
2yg6 FADPutrescine oxidase / 0.664
4hsu FADLysine-specific histone demethylase 1B 1 0.663
1pkv RBFRiboflavin synthase 2.5.1.9 0.661
4i58 FADCyclohexylamine Oxidase / 0.660
4c3y FAD3-ketosteroid dehydrogenase / 0.659
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.658
1i8t FADUDP-galactopyranose mutase 5.4.99.9 0.658
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.658
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.657
1h83 FADPolyamine oxidase 1.5.3.14 0.656
2bgj FADNADPH:ferredoxin reductase / 0.655
2yg7 FADPutrescine oxidase / 0.655
3ept FDAPutative FAD-monooxygenase / 0.655
4gus FADLysine-specific histone demethylase 1B 1 0.655
4z43 FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.653
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.652
3urh FADDihydrolipoyl dehydrogenase / 0.652
3a6r FMNFMN-binding protein / 0.651
3p7n FMNLight-activated DNA-binding protein EL222 / 0.651