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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1e3e NAI Alcohol dehydrogenase 4 1.1.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1e3e NAIAlcohol dehydrogenase 4 1.1.1.1 0.906
3uko NADAlcohol dehydrogenase class-3 / 0.772
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.727
1cdo NADAlcohol dehydrogenase 1 1.1.1.1 0.722
2fzw NADAlcohol dehydrogenase class-3 1.1.1.1 0.721
4jji NADAlcohol dehydrogenase class-3 / 0.721
1e3l NADAlcohol dehydrogenase 4 1.1.1.1 0.707
4l0q NADAlcohol dehydrogenase class-3 / 0.706
2fze APRAlcohol dehydrogenase class-3 1.1.1.1 0.705
2vhx NADAlanine dehydrogenase 1.4.1.1 0.705
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.704
2jhf NADAlcohol dehydrogenase E chain 1.1.1.1 0.701
1mp0 NADAlcohol dehydrogenase class-3 1.1.1.1 0.695
1lde NADAlcohol dehydrogenase E chain 1.1.1.1 0.694
2oxi NADAlcohol dehydrogenase E chain 1.1.1.1 0.690
2vhz NAIAlanine dehydrogenase 1.4.1.1 0.689
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.684
4dl9 NADS-(hydroxymethyl)glutathione dehydrogenase / 0.683
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.678
6adh NADAlcohol dehydrogenase E chain 1.1.1.1 0.678
1het NADAlcohol dehydrogenase E chain 1.1.1.1 0.677
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.672
1pjc NADAlanine dehydrogenase / 0.671
4gl4 NAIAlcohol dehydrogenase class-3 / 0.670
1heu NADAlcohol dehydrogenase E chain 1.1.1.1 0.669
4rqu NADAlcohol dehydrogenase class-P / 0.667
1ihx SNDGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.666
2q3e NAIUDP-glucose 6-dehydrogenase 1.1.1.22 0.666
5kjf NAJAlcohol dehydrogenase E chain 1.1.1.1 0.666
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.665
1uxj NADMalate dehydrogenase / 0.663
3ket NADRedox-sensing transcriptional repressor Rex / 0.663
1yba NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.661
1pl6 NADSorbitol dehydrogenase 1.1.1.14 0.659
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.658
1dc6 NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.657
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.657
4jnk NAIL-lactate dehydrogenase A chain 1.1.1.27 0.656
1lso NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.654
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.654
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.653
1t2c NAIL-lactate dehydrogenase 1.1.1.27 0.653
4p8r NADGlyceraldehyde-3-phosphate dehydrogenase / 0.653
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.652
3kbo NDPGlyoxylate/hydroxypyruvate reductase A / 0.652
4ng5 NAJAlcohol dehydrogenase E chain 1.1.1.1 0.652
1dxy NADD-2-hydroxyisocaproate dehydrogenase 1.1.1 0.651
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.651
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.651
1gad NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.650
5kje NAJAlcohol dehydrogenase E chain 1.1.1.1 0.650