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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a8p FAD Ferredoxin--NADP reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1a8p FADFerredoxin--NADP reductase / 1.284
2qdx FADFerredoxin--NADP+ reductase / 0.964
2bgj FADNADPH:ferredoxin reductase / 0.944
4b4d FADFerredoxin-NADP reductase / 0.927
4fk8 FADFerredoxin--NADP reductase / 0.920
2vnk FADNADPH:ferredoxin reductase / 0.907
2vnj FADNADPH:ferredoxin reductase / 0.887
3crz FADFerredoxin--NADP+ reductase / 0.885
2vnh FADNADPH:ferredoxin reductase / 0.855
2bgi FADNADPH:ferredoxin reductase / 0.830
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.829
2pia FMNPhthalate dioxygenase reductase / 0.800
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.782
1gvh FADFlavohemoprotein / 0.781
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.752
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.749
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.737
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.731
4y7c FADNADPH--cytochrome P450 reductase / 0.731
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.730
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.721
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.715
2ptf FMNUncharacterized protein MTH_863 / 0.713
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.712
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.709
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.708
3qfc FADNADPH--cytochrome P450 reductase / 0.708
3qfs FADNADPH--cytochrome P450 reductase / 0.708
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.708
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.707
4f07 FADStyrene monooxygenase component 2 / 0.707
3fpk FADFerredoxin-NADP reductase / 0.705
2bf4 FADNADPH--cytochrome P450 reductase / 0.704
4l82 FMNUncharacterized protein / 0.704
3e4v FMNUncharacterized protein / 0.702
4eer FMNPhototropin-2 2.7.11.1 0.702
1amo FADNADPH--cytochrome P450 reductase / 0.701
5cho FADFlavin reductase / 0.701
1cqx FADFlavohemoprotein / 0.697
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.697
1n07 FMNRiboflavin kinase 2.7.1.26 0.697
3qft FADNADPH--cytochrome P450 reductase / 0.696
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.695
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.694
3qe2 FADNADPH--cytochrome P450 reductase / 0.694
2pr5 FMNBlue-light photoreceptor / 0.693
2rc6 FADFerredoxin--NADP reductase / 0.693
3pl8 FADPyranose 2-oxidase / 0.693
3vo2 FADFerredoxin--NADP reductase / 0.692
2pg0 FADAcyl-CoA dehydrogenase / 0.691
4ees FMNPhototropin-2 2.7.11.1 0.691
3w5u FADFerredoxin / 0.690
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.689
1ja1 FADNADPH--cytochrome P450 reductase / 0.689
2rc5 FADFerredoxin--NADP reductase / 0.689
1que FADFerredoxin--NADP reductase 1.18.1.2 0.688
3pft FMNFlavin reductase / 0.688
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.688
4ttc FMNIodotyrosine deiodinase 1 / 0.688
4y9r FADNADPH--cytochrome P450 reductase / 0.685
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.677
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.676
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.676
2dji FADPyruvate oxidase / 0.676
1gaq FADFerredoxin / 0.675
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.675
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.675
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.675
4k1x FADNADPH:ferredoxin reductase / 0.675
4u2t FADCholesterol oxidase 1.1.3.6 0.675
2hq9 FADMll6688 protein / 0.674
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.672
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.672
2bn4 FADNADPH--cytochrome P450 reductase / 0.672
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.672
3ojx FADNADPH--cytochrome P450 reductase / 0.672
1p4m FMNRiboflavin kinase 2.7.1.26 0.671
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.671
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.670
4hj3 FMNLOV protein / 0.670
1cc2 FADCholesterol oxidase 1.1.3.6 0.669
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.669
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.669
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.669
2wzv FMNNitroreductase NfnB / 0.669
2wzw FMNNitroreductase NfnB / 0.669
3ojw FADNADPH--cytochrome P450 reductase / 0.669
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.669
4hhd FMNPhototropin-1 2.7.11.1 0.669
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.668
1g28 FMNPHY3 / 0.668
2g37 FADProline dehydrogenase / 0.667
3cox FADCholesterol oxidase 1.1.3.6 0.667
1cbo FADCholesterol oxidase 1.1.3.6 0.666
1n9l FMNPutative blue light receptor / 0.666
2z6c FMNPhototropin-1 2.7.11.1 0.666
3ge6 FMNNitroreductase / 0.666
3rh7 FMNUncharacterized protein / 0.666
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.666
4eet FMNPhototropin-2 2.7.11.1 0.665
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.664
2gjn FMNNitronate monooxygenase 1.13.12.16 0.664
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.664
4y9u FADNADPH--cytochrome P450 reductase / 0.664
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.663
3eo8 FMNPutative nitroreductase / 0.663
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.663
1gpe FADGlucose oxidase 1.1.3.4 0.662
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.662
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.662
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.662
4hj4 FMNLOV protein / 0.662
4yaf FADNADPH--cytochrome P450 reductase / 0.662
1v5e FADPyruvate oxidase / 0.661
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.661
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.660
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.659
1rz0 FADPhenol 2-hydroxylase component B / 0.659
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.659
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.659
5buk FADFADH2-dependent halogenase / 0.659
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.658
2fzm FADBifunctional protein PutA 1.5.5.2 0.657
2gpj FADSiderophore-interacting protein / 0.656
3nix FADFlavoprotein/dehydrogenase / 0.656
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.656
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.655
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.655
2nr4 FMNConserved protein / 0.655
5dkk FMNPredicted protein / 0.655
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.653
4hj6 FMNLOV protein / 0.653
4rhe FMNFlavin prenyltransferase UbiX / 0.653
3hj9 FMNUncharacterized protein / 0.652
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.652
4qly FMNEnone reductase CLA-ER / 0.652
5dbj FADFADH2-dependent halogenase PltA / 0.652
1s4m LUMRiboflavin biosynthesis protein / 0.651
1t6z RBFRiboflavin biosynthesis protein / 0.651
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.651
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.651
1knp FADL-aspartate oxidase 1.4.3.16 0.650
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.650