sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4el0 | D1K | Glycogen phosphorylase, muscle form | 2.4.1.1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4el0 | D1K | Glycogen phosphorylase, muscle form | 2.4.1.1 | 1.000 | |
| 3mt8 | 17T | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.616 | |
| 2qn7 | HBZ | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.608 | |
| 4eke | D1I | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.587 | |
| 2qln | F59 | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.567 | |
| 3l7d | DK5 | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.564 | |
| 1k08 | BZD | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.543 | |
| 2qn3 | F55 | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.537 | |
| 3g2h | KOT | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.520 | |
| 2qrq | S13 | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.510 | |
| 2g9v | IFM | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.505 | |
| 5gpb | GPM | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.488 | |
| 2g9u | G27 | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.484 | |
| 3ms4 | 21N | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.483 | |
| 3zcs | CAW | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.472 | |
| 3p62 | FMN | Pentaerythritol tetranitrate reductase | / | 0.455 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.451 | |
| 1noi | NTZ | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.448 | |
| 1vyr | FMN | Pentaerythritol tetranitrate reductase | / | 0.445 | |
| 2abb | FMN | Pentaerythritol tetranitrate reductase | / | 0.445 | |
| 3vyd | VYD | Renin | 3.4.23.15 | 0.445 | |
| 4blr | UTP | NTPase P4 | / | 0.443 | |
| 1bil | 0IU | Renin | 3.4.23.15 | 0.442 | |
| 2hfu | MEV | Mevalonate kinase | / | 0.442 | |
| 3tox | NAP | Putative oxidoreductase | / | 0.442 | |
| 1c3x | 8IG | Purine nucleoside phosphorylase | 2.4.2.1 | 0.441 | |
| 2ztv | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.441 | |
| 3vyf | VYF | Renin | 3.4.23.15 | 0.440 |