2.300 Å
X-ray
1990-06-04
| Name: | Glycogen phosphorylase, muscle form |
|---|---|
| ID: | PYGM_RABIT |
| AC: | P00489 |
| Organism: | Oryctolagus cuniculus |
| Reign: | Eukaryota |
| TaxID: | 9986 |
| EC Number: | 2.4.1.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 21.623 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.422 | 688.500 |
| % Hydrophobic | % Polar |
|---|---|
| 37.25 | 62.75 |
| According to VolSite | |

| HET Code: | GPM |
|---|---|
| Formula: | C7H13O8P |
| Molecular weight: | 256.147 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 69.72 % |
| Polar Surface area: | 163.15 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 4 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 32.5198 | 22.6929 | 26.972 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2P | N | GLY- 135 | 2.7 | 157.61 | H-Bond (Protein Donor) |
| C6 | CD2 | LEU- 139 | 4.1 | 0 | Hydrophobic |
| O6 | ND1 | HIS- 377 | 2.58 | 155.37 | H-Bond (Ligand Donor) |
| O4 | ND2 | ASN- 484 | 3.12 | 127.83 | H-Bond (Protein Donor) |
| O6 | ND2 | ASN- 484 | 3.08 | 156.76 | H-Bond (Protein Donor) |
| O3 | OE1 | GLU- 672 | 3 | 156.48 | H-Bond (Ligand Donor) |
| C2 | CB | ALA- 673 | 4.36 | 0 | Hydrophobic |
| C4 | CB | SER- 674 | 3.95 | 0 | Hydrophobic |
| O3 | N | SER- 674 | 2.97 | 156.06 | H-Bond (Protein Donor) |
| O3 | N | GLY- 675 | 2.81 | 130.89 | H-Bond (Protein Donor) |
| O4 | N | GLY- 675 | 2.75 | 132.53 | H-Bond (Protein Donor) |
| O2 | O | HOH- 1452 | 2.85 | 156.36 | H-Bond (Ligand Donor) |