Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5gpb GPM Glycogen phosphorylase, muscle form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.894
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.833
3ms4 21NGlycogen phosphorylase, muscle form 2.4.1.1 0.820
2qn3 F55Glycogen phosphorylase, muscle form 2.4.1.1 0.799
4el0 D1KGlycogen phosphorylase, muscle form 2.4.1.1 0.799
2qln F59Glycogen phosphorylase, muscle form 2.4.1.1 0.798
2qn7 HBZGlycogen phosphorylase, muscle form 2.4.1.1 0.795
3mt8 17TGlycogen phosphorylase, muscle form 2.4.1.1 0.790
4gpb GFPGlycogen phosphorylase, muscle form 2.4.1.1 0.790
2g9u G27Glycogen phosphorylase, muscle form 2.4.1.1 0.788
1noi NTZGlycogen phosphorylase, muscle form 2.4.1.1 0.782
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.781
4eke D1IGlycogen phosphorylase, muscle form 2.4.1.1 0.778
3g2l LEWGlycogen phosphorylase, muscle form 2.4.1.1 0.775
4el5 D1MGlycogen phosphorylase, muscle form 2.4.1.1 0.769
2g9r G27Glycogen phosphorylase, muscle form 2.4.1.1 0.768
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.766
3zcs CAWGlycogen phosphorylase, muscle form 2.4.1.1 0.764
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.760
3l7d DK5Glycogen phosphorylase, muscle form 2.4.1.1 0.711
4xsr UPGAlr3699 protein / 0.699
1uqt U2FTrehalose-6-phosphate synthase 2.4.1.15 0.684
4kq2 1S3Glycogen [starch] synthase isoform 2 2.4.1.11 0.668
3t3i GPWGlycogen phosphorylase, muscle form 2.4.1.1 0.659