sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1uda | UFG | UDP-glucose 4-epimerase | 5.1.3.2 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1uda | UFG | UDP-glucose 4-epimerase | 5.1.3.2 | 1.000 | |
| 1a9z | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.786 | |
| 1udb | UFG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.709 | |
| 1udc | UFM | UDP-glucose 4-epimerase | 5.1.3.2 | 0.628 | |
| 1a9y | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.612 | |
| 1kvu | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.606 | |
| 1xel | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.603 | |
| 1kvs | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.598 | |
| 1kvt | UPG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.562 | |
| 2udp | UPP | UDP-glucose 4-epimerase | 5.1.3.2 | 0.550 | |
| 1ek6 | UPG | UDP-glucose 4-epimerase | / | 0.512 | |
| 1hzj | UD1 | UDP-glucose 4-epimerase | / | 0.511 | |
| 1lrj | UD1 | UDP-glucose 4-epimerase | 5.1.3.2 | 0.509 | |
| 1i3k | UPG | UDP-glucose 4-epimerase | / | 0.476 | |
| 3kb1 | ADP | Iron-sulfur cluster carrier protein | / | 0.469 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.460 | |
| 4jnk | ZHK | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.457 | |
| 1nvt | NAP | Shikimate dehydrogenase (NADP(+)) | / | 0.456 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.451 | |
| 3ziu | LSS | Leucyl-tRNA synthetase | / | 0.450 | |
| 4c7k | NAP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.450 | |
| 1lbc | CYZ | Glutamate receptor 2 | / | 0.447 | |
| 2ev9 | NAP | Shikimate dehydrogenase (NADP(+)) | / | 0.446 | |
| 2g1r | 3IG | Renin | 3.4.23.15 | 0.446 | |
| 1e3e | NAI | Alcohol dehydrogenase 4 | 1.1.1.1 | 0.445 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.445 | |
| 3enk | UPG | UDP-glucose 4-epimerase | / | 0.444 | |
| 4zrn | UPG | UDP-glucose 4-epimerase, putative | / | 0.444 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.443 | |
| 5dp2 | NAP | CurF | / | 0.442 | |
| 3hl0 | NAD | Maleylacetate reductase | / | 0.441 | |
| 3img | BZ2 | Pantothenate synthetase | 6.3.2.1 | 0.441 | |
| 3mpi | FAD | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.440 |