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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ldeNADAlcohol dehydrogenase E chain1.1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1ldeNADAlcohol dehydrogenase E chain1.1.1.11.000
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.642
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.632
1adcPADAlcohol dehydrogenase E chain1.1.1.10.627
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.625
1adbCNDAlcohol dehydrogenase E chain1.1.1.10.617
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.617
1axgNADAlcohol dehydrogenase E chain1.1.1.10.613
1hszNADAlcohol dehydrogenase 1B1.1.1.10.609
2oxiNADAlcohol dehydrogenase E chain1.1.1.10.608
1u3vNADAlcohol dehydrogenase 1B1.1.1.10.607
1a71NADAlcohol dehydrogenase E chain1.1.1.10.606
4nfhNAJAlcohol dehydrogenase E chain1.1.1.10.605
1hldNADAlcohol dehydrogenase E chain1.1.1.10.595
2jhfNADAlcohol dehydrogenase E chain1.1.1.10.595
1axeNADAlcohol dehydrogenase E chain1.1.1.10.580
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.577
1agnNADAlcohol dehydrogenase class 4 mu/sigma chain1.1.1.10.559
5cdsNAJAlcohol dehydrogenase E chain1.1.1.10.559
5kjfNAJAlcohol dehydrogenase E chain1.1.1.10.543
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.541
1hetNADAlcohol dehydrogenase E chain1.1.1.10.539
5kjcNAJAlcohol dehydrogenase E chain1.1.1.10.538
5kj6NAJAlcohol dehydrogenase E chain1.1.1.10.537
3oq6NAJAlcohol dehydrogenase E chain1.1.1.10.534
4nfsNAJAlcohol dehydrogenase E chain1.1.1.10.527
1cdoNADAlcohol dehydrogenase 11.1.1.10.525
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase/0.524
5kczNAJAlcohol dehydrogenase E chain1.1.1.10.523
1ma0NADAlcohol dehydrogenase class-31.1.1.10.520
4cpdNADAlcohol dehydrogenase/0.519
3jv7NADSecondary alcohol dehydrogenase/0.518
4dl9NADS-(hydroxymethyl)glutathione dehydrogenase/0.518
4dxhNAJAlcohol dehydrogenase E chain1.1.1.10.518
1hf3NADAlcohol dehydrogenase E chain1.1.1.10.517
5kjeNAJAlcohol dehydrogenase E chain1.1.1.10.515
1e3lNADAlcohol dehydrogenase 41.1.1.10.508
4c4oNADSADH/0.508
1p0fNAPNADP-dependent alcohol dehydrogenase1.1.1.20.506
5kcpNAJAlcohol dehydrogenase E chain1.1.1.10.503
1r37NADNAD-dependent alcohol dehydrogenase1.1.1.10.496
5kj1NAJAlcohol dehydrogenase E chain1.1.1.10.494
5cdgNAJAlcohol dehydrogenase E chain1.1.1.10.490
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.489
4gl4NAIAlcohol dehydrogenase class-3/0.488
1ju9NADAlcohol dehydrogenase E chain1.1.1.10.484
1f8fNADBenzyl alcohol dehydrogenase/0.483
1qlhNADAlcohol dehydrogenase E chain1.1.1.10.483
2xaaNADSecondary alcohol dehydrogenase/0.483
1lluNADAlcohol dehydrogenase/0.477
4jjiNADAlcohol dehydrogenase class-3/0.476
4w6z8IDAlcohol dehydrogenase 11.1.1.10.472
3twoNDPMannitol dehydrogenase/0.470
1h2bNAJNAD-dependent alcohol dehydrogenase/0.467
4gkvNADAlcohol dehydrogenase, propanol-preferring1.1.1.10.467
5cdtNAJAlcohol dehydrogenase E chain1.1.1.10.467
3ukoNADAlcohol dehydrogenase class-3/0.462
1kevNDPNADP-dependent isopropanol dehydrogenase1.1.1.800.460
1kolNADGlutathione-independent formaldehyde dehydrogenase/0.459
1yqxNAPSinapyl alcohol dehydrogenase/0.458
3cosNADAlcohol dehydrogenase 41.1.1.10.448
5envNADAlcohol dehydrogenase 11.1.1.10.447