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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.291.000
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.769
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.619
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.590
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.585
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.548
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.547
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.542
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.540
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.539
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.535
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.532
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.526
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.525
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.521
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.519
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.513
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.504
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.503
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.499
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.495
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.495
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.489
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.484
3isjA8DPantothenate synthetase6.3.2.10.484
2ivpATPtRNA N6-adenosine threonylcarbamoyltransferase/0.471
3biz61EWee1-like protein kinase2.7.10.20.468
3cow52HPantothenate synthetase6.3.2.10.465
4m2xTMQDihydrofolate reductase1.5.1.30.465
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.464
1hfqMOTDihydrofolate reductase1.5.1.30.462
3bloQEIQueuine tRNA-ribosyltransferase2.4.2.290.462
3coy53HPantothenate synthetase6.3.2.10.462
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
4fgcPQ0NADPH-dependent 7-cyano-7-deazaguanine reductase1.7.1.130.461
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.460
3c34KAIGlutamate receptor ionotropic, kainate 1/0.458
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.457
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.456
3oafOAGDihydrofolate reductase1.5.1.30.456
4fewPP2Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.456
2zscBTNTamavidin2/0.455
4ocvANPAminoglycoside phosphotransferase/0.455
4feu537Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.453
4ug5XFKNitric oxide synthase oxygenase1.14.13.1650.453
3bt9DEQHTH-type transcriptional regulator QacR/0.451
4x81MVIMycinamicin III 3''-O-methyltransferase2.1.1.2370.450
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.449
4gi5FADPutative NAD(P)H dehydrogenase (Quinone)/0.447
3ex8AIFRiboflavin biosynthesis protein RibD1.1.1.1930.446
4blwSAHRibosomal RNA large subunit methyltransferase J/0.446
5dn1AMZPhosphoribosyl isomerase A5.3.1.160.446
5ej4TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase/0.445
1qvuPRLHTH-type transcriptional regulator QacR/0.443
1xzqFONtRNA modification GTPase MnmE3.6.50.443
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.443
4h3g10QBeta-secretase 13.4.23.460.443
2qnqQN3Gag-Pol polyprotein3.4.23.160.442
1k6pXN3Gag-Pol polyprotein3.4.23.160.441
4l17DNQGlutamate receptor 2/0.441
1sm2STUTyrosine-protein kinase ITK/TSK2.7.10.20.440
2ieaTDPPyruvate dehydrogenase E1 component1.2.4.10.440
2r0cFADPutative FAD-monooxygenase/0.440
3gjwGJWPoly [ADP-ribose] polymerase 12.4.2.300.440
5g53NECAdenosine receptor A2a/0.440
3sn6P0GBeta-2 adrenergic receptor/0.440