2.370 Å
X-ray
2012-05-30
| Name: | Aminoglycoside 3'-phosphotransferase AphA1-IAB |
|---|---|
| ID: | B0VD92_ACIBY |
| AC: | B0VD92 |
| Organism: | Acinetobacter baumannii |
| Reign: | Bacteria |
| TaxID: | 509173 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 59.607 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.450 | 614.250 |
| % Hydrophobic | % Polar |
|---|---|
| 42.86 | 57.14 |
| According to VolSite | |

| HET Code: | 537 |
|---|---|
| Formula: | C14H8N2O |
| Molecular weight: | 220.226 g/mol |
| DrugBank ID: | DB01782 |
| Buried Surface Area: | 58.86 % |
| Polar Surface area: | 45.75 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 1 |
| Rings: | 4 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 0 |
| X | Y | Z |
|---|---|---|
| -58.2348 | 47.4211 | -44.8772 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5 | CG2 | ILE- 40 | 4.29 | 0 | Hydrophobic |
| DuAr | DuAr | PHE- 53 | 3.7 | 0 | Aromatic Face/Face |
| C1 | CB | PHE- 53 | 3.54 | 0 | Hydrophobic |
| C1 | CG | PRO- 82 | 4.3 | 0 | Hydrophobic |
| N23 | N | ILE- 101 | 2.88 | 165.68 | H-Bond (Protein Donor) |
| N24 | O | ILE- 101 | 2.68 | 159.18 | H-Bond (Ligand Donor) |
| C14 | CG2 | THR- 105 | 3.58 | 0 | Hydrophobic |
| C13 | CD1 | ILE- 205 | 3.54 | 0 | Hydrophobic |
| C3 | CG2 | ILE- 215 | 3.82 | 0 | Hydrophobic |
| C4 | CD1 | ILE- 215 | 3.79 | 0 | Hydrophobic |
| C16 | CD1 | ILE- 215 | 3.73 | 0 | Hydrophobic |