2.370 Å
X-ray
2012-05-30
Name: | Aminoglycoside 3'-phosphotransferase AphA1-IAB |
---|---|
ID: | B0VD92_ACIBY |
AC: | B0VD92 |
Organism: | Acinetobacter baumannii |
Reign: | Bacteria |
TaxID: | 509173 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 59.607 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.450 | 614.250 |
% Hydrophobic | % Polar |
---|---|
42.86 | 57.14 |
According to VolSite |
HET Code: | 537 |
---|---|
Formula: | C14H8N2O |
Molecular weight: | 220.226 g/mol |
DrugBank ID: | DB01782 |
Buried Surface Area: | 58.86 % |
Polar Surface area: | 45.75 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 1 |
Rings: | 4 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
-58.2348 | 47.4211 | -44.8772 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CG2 | ILE- 40 | 4.29 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 53 | 3.7 | 0 | Aromatic Face/Face |
C1 | CB | PHE- 53 | 3.54 | 0 | Hydrophobic |
C1 | CG | PRO- 82 | 4.3 | 0 | Hydrophobic |
N23 | N | ILE- 101 | 2.88 | 165.68 | H-Bond (Protein Donor) |
N24 | O | ILE- 101 | 2.68 | 159.18 | H-Bond (Ligand Donor) |
C14 | CG2 | THR- 105 | 3.58 | 0 | Hydrophobic |
C13 | CD1 | ILE- 205 | 3.54 | 0 | Hydrophobic |
C3 | CG2 | ILE- 215 | 3.82 | 0 | Hydrophobic |
C4 | CD1 | ILE- 215 | 3.79 | 0 | Hydrophobic |
C16 | CD1 | ILE- 215 | 3.73 | 0 | Hydrophobic |