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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4fk8FADFerredoxin--NADP reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4fk8FADFerredoxin--NADP reductase/1.000
1a8pFADFerredoxin--NADP reductase/0.659
2bgiFADNADPH:ferredoxin reductase/0.633
3crzFADFerredoxin--NADP+ reductase/0.617
2vnkFADNADPH:ferredoxin reductase/0.608
2bgjFADNADPH:ferredoxin reductase/0.597
2vnjFADNADPH:ferredoxin reductase/0.597
2qdxFADFerredoxin--NADP+ reductase/0.589
4b4dFADFerredoxin-NADP reductase/0.569
3fpkFADFerredoxin-NADP reductase/0.489
4k1xFADNADPH:ferredoxin reductase/0.487
4y9uFADNADPH--cytochrome P450 reductase/0.474
1ja1FADNADPH--cytochrome P450 reductase/0.464
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.464
4yafFADNADPH--cytochrome P450 reductase/0.464
3bc3OPTCathepsin L13.4.22.150.462
1xddAAYIntegrin alpha-L/0.460
3oeeANPATP synthase subunit alpha, mitochondrial/0.459
3oeeANPATP synthase subunit beta, mitochondrial3.6.3.140.459
4g3jVNTLanosterol 14-alpha-demethylase/0.455
3qe2FADNADPH--cytochrome P450 reductase/0.454
1j9zFADNADPH--cytochrome P450 reductase/0.453
4g7gVFVLanosterol 14-alpha-demethylase/0.453
2yylFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.452
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.452
1amoFADNADPH--cytochrome P450 reductase/0.449
1jq5NADGlycerol dehydrogenase1.1.1.60.449
2hrcCHDFerrochelatase, mitochondrial4.99.1.10.448
3zkpERBErythromycin C-12 hydroxylase1.14.13.1540.447
1bwsNDPGDP-L-fucose synthase/0.445
2yyiFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.444
3w5uFADFerredoxin/0.444
4bb3KKAIsopenicillin N synthase1.21.3.10.443
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.442
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.441
1udaUFGUDP-glucose 4-epimerase5.1.3.20.440