scPDB - Distribution of Binding site Similarity values of 4avg entry / Site 2

Distribution of Binding site similarity measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4avg	SL6	Polymerase acidic protein

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4avg	SL6	Polymerase acidic protein	/	1.000
4e5h	0N8	Polymerase acidic protein	/	0.557
5fdg	0N8	Polymerase acidic protein	/	0.541
5d9j	0N8	Polymerase acidic protein	/	0.529
4e5l	DBH	Polymerase acidic protein	/	0.518
4e5f	0N7	Polymerase acidic protein	/	0.514
4awk	CI1	Polymerase acidic protein	/	0.513
4awm	KDH	Polymerase acidic protein	/	0.510
4e5i	0N9	Polymerase acidic protein	/	0.467
4awg	CI3	Polymerase acidic protein	/	0.460
5ccy	TMP	Polymerase acidic protein	/	0.453