2.100 Å
X-ray
2015-12-16
Name: | Polymerase acidic protein |
---|---|
ID: | PA_I34A1 |
AC: | P03433 |
Organism: | Influenza A virus |
Reign: | Viruses |
TaxID: | 211044 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 34.522 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.598 | 627.750 |
% Hydrophobic | % Polar |
---|---|
41.40 | 58.60 |
According to VolSite |
HET Code: | 0N8 |
---|---|
Formula: | C23H24ClNO4 |
Molecular weight: | 413.894 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 50.32 % |
Polar Surface area: | 81.87 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
1.24704 | 33.0688 | 15.9724 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4 | CG1 | ILE- 43 | 4.18 | 0 | Hydrophobic |
C5 | CB | HIS- 46 | 4.07 | 0 | Hydrophobic |
C16 | CB | PHE- 90 | 4.19 | 0 | Hydrophobic |
C15 | CB | LEU- 91 | 4.34 | 0 | Hydrophobic |
C18 | CG | GLU- 104 | 4.4 | 0 | Hydrophobic |
CL2 | CD | LYS- 119 | 3.69 | 0 | Hydrophobic |
O26 | NZ | LYS- 119 | 2.9 | 159.57 | H-Bond (Protein Donor) |
O26 | NZ | LYS- 119 | 2.9 | 0 | Ionic (Protein Cationic) |
CL2 | CB | LYS- 122 | 3.96 | 0 | Hydrophobic |
C20 | CD | LYS- 122 | 4.26 | 0 | Hydrophobic |
CL2 | CG2 | ILE- 123 | 4.18 | 0 | Hydrophobic |
O28 | MN | MN- 202 | 2.44 | 0 | Metal Acceptor |
O25 | MN | MN- 202 | 2.23 | 0 | Metal Acceptor |
O27 | MN | MN- 203 | 2.25 | 0 | Metal Acceptor |
O28 | MN | MN- 203 | 2.13 | 0 | Metal Acceptor |
O26 | O | HOH- 308 | 3.48 | 127.05 | H-Bond (Protein Donor) |