2.100 Å
X-ray
2015-12-16
| Name: | Polymerase acidic protein |
|---|---|
| ID: | PA_I34A1 |
| AC: | P03433 |
| Organism: | Influenza A virus |
| Reign: | Viruses |
| TaxID: | 211044 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 34.522 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.598 | 627.750 |
| % Hydrophobic | % Polar |
|---|---|
| 41.40 | 58.60 |
| According to VolSite | |

| HET Code: | 0N8 |
|---|---|
| Formula: | C23H24ClNO4 |
| Molecular weight: | 413.894 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 50.32 % |
| Polar Surface area: | 81.87 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 1.24704 | 33.0688 | 15.9724 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4 | CG1 | ILE- 43 | 4.18 | 0 | Hydrophobic |
| C5 | CB | HIS- 46 | 4.07 | 0 | Hydrophobic |
| C16 | CB | PHE- 90 | 4.19 | 0 | Hydrophobic |
| C15 | CB | LEU- 91 | 4.34 | 0 | Hydrophobic |
| C18 | CG | GLU- 104 | 4.4 | 0 | Hydrophobic |
| CL2 | CD | LYS- 119 | 3.69 | 0 | Hydrophobic |
| O26 | NZ | LYS- 119 | 2.9 | 159.57 | H-Bond (Protein Donor) |
| O26 | NZ | LYS- 119 | 2.9 | 0 | Ionic (Protein Cationic) |
| CL2 | CB | LYS- 122 | 3.96 | 0 | Hydrophobic |
| C20 | CD | LYS- 122 | 4.26 | 0 | Hydrophobic |
| CL2 | CG2 | ILE- 123 | 4.18 | 0 | Hydrophobic |
| O28 | MN | MN- 202 | 2.44 | 0 | Metal Acceptor |
| O25 | MN | MN- 202 | 2.23 | 0 | Metal Acceptor |
| O27 | MN | MN- 203 | 2.25 | 0 | Metal Acceptor |
| O28 | MN | MN- 203 | 2.13 | 0 | Metal Acceptor |
| O26 | O | HOH- 308 | 3.48 | 127.05 | H-Bond (Protein Donor) |