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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5fdg0N8Polymerase acidic protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
5fdg0N8Polymerase acidic protein/1.000
4e5h0N8Polymerase acidic protein/0.589
4avgSL6Polymerase acidic protein/0.543
4awkCI1Polymerase acidic protein/0.540
4awmKDHPolymerase acidic protein/0.531
4e5f0N7Polymerase acidic protein/0.531
5d9j0N8Polymerase acidic protein/0.527
4awgCI3Polymerase acidic protein/0.494
4e5lDBHPolymerase acidic protein/0.485
5ccyTMPPolymerase acidic protein/0.462
5d4gU5PPolymerase acidic protein/0.462
4e5i0N9Polymerase acidic protein/0.448