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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5fdg 0N8 Polymerase acidic protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5fdg 0N8Polymerase acidic protein / 0.992
5cgv 0N8Polymerase acidic protein / 0.705
4avg SL6Polymerase acidic protein / 0.682
5d8u 0N8Polymerase acidic protein / 0.678
5d9j 0N8Polymerase acidic protein / 0.666
4e5i 0N9Polymerase acidic protein / 0.662
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.657
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.655
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.652
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.651
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.650
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.650