2.170 Å
X-ray
2015-07-09
Name: | Polymerase acidic protein |
---|---|
ID: | C3W5S0_I09A0 |
AC: | C3W5S0 |
Organism: | Influenza A virus |
Reign: | Viruses |
TaxID: | 641501 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 34.508 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 3 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.333 | 533.250 |
% Hydrophobic | % Polar |
---|---|
44.94 | 55.06 |
According to VolSite |
HET Code: | 0N8 |
---|---|
Formula: | C23H24ClNO4 |
Molecular weight: | 413.894 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 49.35 % |
Polar Surface area: | 81.87 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
-28.0413 | -17.1029 | 17.5473 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2 | CB | ALA- 20 | 4.23 | 0 | Hydrophobic |
C4 | CD1 | TYR- 24 | 3.45 | 0 | Hydrophobic |
C1 | CG1 | ILE- 38 | 4.29 | 0 | Hydrophobic |
C6 | CD1 | ILE- 38 | 3.47 | 0 | Hydrophobic |
O28 | NE2 | HIS- 41 | 3.21 | 139.92 | H-Bond (Ligand Donor) |
C17 | CB | PHE- 105 | 4.18 | 0 | Hydrophobic |
C16 | CB | PHE- 105 | 4.03 | 0 | Hydrophobic |
C18 | CG | GLU- 119 | 4.48 | 0 | Hydrophobic |
CL2 | CG | LYS- 134 | 3.84 | 0 | Hydrophobic |
O26 | NZ | LYS- 134 | 3.52 | 0 | Ionic (Protein Cationic) |
O25 | NZ | LYS- 134 | 2.92 | 0 | Ionic (Protein Cationic) |
O25 | NZ | LYS- 134 | 2.92 | 129.39 | H-Bond (Protein Donor) |
CL2 | CB | LYS- 137 | 3.56 | 0 | Hydrophobic |
C18 | CD1 | ILE- 138 | 4 | 0 | Hydrophobic |
CL2 | CD1 | ILE- 138 | 3.8 | 0 | Hydrophobic |
O28 | MN | MN- 301 | 2.34 | 0 | Metal Acceptor |
O26 | MN | MN- 301 | 2.32 | 0 | Metal Acceptor |
O27 | MN | MN- 302 | 2.23 | 0 | Metal Acceptor |
O28 | MN | MN- 302 | 2.07 | 0 | Metal Acceptor |