1.850 Å
X-ray
2015-08-18
| Name: | Polymerase acidic protein |
|---|---|
| ID: | C3W5S0_I09A0 |
| AC: | C3W5S0 |
| Organism: | Influenza A virus |
| Reign: | Viruses |
| TaxID: | 641501 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 35.261 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 4 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.506 | 583.875 |
| % Hydrophobic | % Polar |
|---|---|
| 44.51 | 55.49 |
| According to VolSite | |

| HET Code: | 0N8 |
|---|---|
| Formula: | C23H24ClNO4 |
| Molecular weight: | 413.894 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 39.82 % |
| Polar Surface area: | 81.87 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 84.3957 | 87.8616 | 7.86064 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CL2 | CB | ALA- 37 | 3.8 | 0 | Hydrophobic |
| C20 | CG1 | ILE- 38 | 4.38 | 0 | Hydrophobic |
| CL2 | CG1 | ILE- 38 | 3.86 | 0 | Hydrophobic |
| C20 | CB | HIS- 41 | 4.47 | 0 | Hydrophobic |
| O26 | NZ | LYS- 115 | 3.27 | 0 | Ionic (Protein Cationic) |
| O25 | NZ | LYS- 115 | 3.2 | 0 | Ionic (Protein Cationic) |
| O25 | NZ | LYS- 115 | 3.2 | 131.17 | H-Bond (Protein Donor) |
| O28 | MN | MN- 201 | 2.18 | 0 | Metal Acceptor |
| O25 | MN | MN- 201 | 1.91 | 0 | Metal Acceptor |
| O27 | MN | MN- 202 | 2.04 | 0 | Metal Acceptor |
| O28 | MN | MN- 202 | 2.13 | 0 | Metal Acceptor |
| O25 | O | HOH- 329 | 3 | 179.98 | H-Bond (Protein Donor) |
| O28 | O | HOH- 333 | 2.82 | 136.85 | H-Bond (Ligand Donor) |