1.850 Å
X-ray
2015-08-18
Name: | Polymerase acidic protein |
---|---|
ID: | C3W5S0_I09A0 |
AC: | C3W5S0 |
Organism: | Influenza A virus |
Reign: | Viruses |
TaxID: | 641501 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 35.261 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 4 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.506 | 583.875 |
% Hydrophobic | % Polar |
---|---|
44.51 | 55.49 |
According to VolSite |
HET Code: | 0N8 |
---|---|
Formula: | C23H24ClNO4 |
Molecular weight: | 413.894 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 39.82 % |
Polar Surface area: | 81.87 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
84.3957 | 87.8616 | 7.86064 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CL2 | CB | ALA- 37 | 3.8 | 0 | Hydrophobic |
C20 | CG1 | ILE- 38 | 4.38 | 0 | Hydrophobic |
CL2 | CG1 | ILE- 38 | 3.86 | 0 | Hydrophobic |
C20 | CB | HIS- 41 | 4.47 | 0 | Hydrophobic |
O26 | NZ | LYS- 115 | 3.27 | 0 | Ionic (Protein Cationic) |
O25 | NZ | LYS- 115 | 3.2 | 0 | Ionic (Protein Cationic) |
O25 | NZ | LYS- 115 | 3.2 | 131.17 | H-Bond (Protein Donor) |
O28 | MN | MN- 201 | 2.18 | 0 | Metal Acceptor |
O25 | MN | MN- 201 | 1.91 | 0 | Metal Acceptor |
O27 | MN | MN- 202 | 2.04 | 0 | Metal Acceptor |
O28 | MN | MN- 202 | 2.13 | 0 | Metal Acceptor |
O25 | O | HOH- 329 | 3 | 179.98 | H-Bond (Protein Donor) |
O28 | O | HOH- 333 | 2.82 | 136.85 | H-Bond (Ligand Donor) |