sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5d9j | 0N8 | Polymerase acidic protein |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 5d9j | 0N8 | Polymerase acidic protein | / | 1.000 | |
| 4e5h | 0N8 | Polymerase acidic protein | / | 0.686 | |
| 4avg | SL6 | Polymerase acidic protein | / | 0.590 | |
| 4e5f | 0N7 | Polymerase acidic protein | / | 0.581 | |
| 4awk | CI1 | Polymerase acidic protein | / | 0.578 | |
| 5fdg | 0N8 | Polymerase acidic protein | / | 0.564 | |
| 4e5l | DBH | Polymerase acidic protein | / | 0.563 | |
| 5ccy | TMP | Polymerase acidic protein | / | 0.561 | |
| 4awg | CI3 | Polymerase acidic protein | / | 0.537 | |
| 4e5i | 0N9 | Polymerase acidic protein | / | 0.520 | |
| 4awm | KDH | Polymerase acidic protein | / | 0.517 | |
| 5d4g | U5P | Polymerase acidic protein | / | 0.504 | |
| 3ekp | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.471 | |
| 1u1i | NAD | Myo-inositol-1-phosphate synthase (Ino1) | / | 0.459 | |
| 3oxv | 478 | Gag-Pol polyprotein | 3.4.23.16 | 0.457 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.455 | |
| 3qvx | NAD | Myo-inositol-1-phosphate synthase (Ino1) | / | 0.452 | |
| 4hdp | G52 | Gag-Pol polyprotein | 3.4.23.16 | 0.452 | |
| 3dk1 | G05 | Gag-Pol polyprotein | 3.4.23.16 | 0.451 | |
| 1bv9 | XV6 | Gag-Pol polyprotein | 3.4.23.16 | 0.450 | |
| 4djy | 0KR | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
| 3koz | Z97 | D-ornithine 4,5-aminomutase subunit beta | / | 0.449 | |
| 1npa | 3NH | Gag-Pol polyprotein | 3.4.23.16 | 0.448 | |
| 1npw | LGZ | Gag-Pol polyprotein | 3.4.23.16 | 0.448 | |
| 2bpw | 1IN | Gag-Pol polyprotein | 3.4.23.16 | 0.448 | |
| 4xwt | U5P | Ribonuclease J | / | 0.448 | |
| 2avv | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.447 | |
| 2vn1 | FK5 | Peptidylprolyl isomerase | / | 0.447 | |
| 3bgb | LJG | Gag-Pol polyprotein | 3.4.23.16 | 0.447 | |
| 3cyw | 017 | Gag-Pol polyprotein | 3.4.23.16 | 0.446 | |
| 3koy | Z97 | D-ornithine 4,5-aminomutase subunit beta | / | 0.446 | |
| 2i0a | MUI | Protease | / | 0.441 | |
| 1bwb | 146 | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
| 4a6b | QG8 | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
| 4n6h | EJ4 | Delta-type opioid receptor | / | 0.440 |