2.600 Å
X-ray
2012-06-04
Name: | Polymerase acidic protein |
---|---|
ID: | C3W5S0_I09A0 |
AC: | C3W5S0 |
Organism: | Influenza A virus |
Reign: | Viruses |
TaxID: | 641501 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 36.898 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.421 | 718.875 |
% Hydrophobic | % Polar |
---|---|
41.31 | 58.69 |
According to VolSite |
HET Code: | KDH |
---|---|
Formula: | C22H18O11 |
Molecular weight: | 458.372 g/mol |
DrugBank ID: | DB12116 |
Buried Surface Area: | 53.65 % |
Polar Surface area: | 197.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 8 |
Rings: | 4 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
9.80676 | -33.81 | 19.8652 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C01 | CE2 | TYR- 24 | 4.14 | 0 | Hydrophobic |
C26 | CB | TYR- 24 | 3.84 | 0 | Hydrophobic |
DuAr | DuAr | TYR- 24 | 3.83 | 0 | Aromatic Face/Face |
O03 | OE1 | GLU- 26 | 3.12 | 152.32 | H-Bond (Ligand Donor) |
C43 | CB | ALA- 37 | 3.64 | 0 | Hydrophobic |
C01 | CD1 | ILE- 38 | 4.37 | 0 | Hydrophobic |
C41 | CG1 | ILE- 38 | 3.55 | 0 | Hydrophobic |
C39 | CB | HIS- 41 | 3.68 | 0 | Hydrophobic |
O50 | O | VAL- 122 | 3.04 | 147.48 | H-Bond (Ligand Donor) |
O10 | NZ | LYS- 134 | 2.99 | 157.65 | H-Bond (Protein Donor) |
O1 | MN | MN- 901 | 2.22 | 0 | Metal Acceptor |
O7 | MN | MN- 901 | 2.14 | 0 | Metal Acceptor |
DuAr | MN | MN- 901 | 3.97 | 96.25 | Pi/Cation |
O1 | MN | MN- 902 | 1.93 | 0 | Metal Acceptor |