2.600 Å
X-ray
2012-06-04
| Name: | Polymerase acidic protein |
|---|---|
| ID: | C3W5S0_I09A0 |
| AC: | C3W5S0 |
| Organism: | Influenza A virus |
| Reign: | Viruses |
| TaxID: | 641501 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 36.898 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.421 | 718.875 |
| % Hydrophobic | % Polar |
|---|---|
| 41.31 | 58.69 |
| According to VolSite | |

| HET Code: | KDH |
|---|---|
| Formula: | C22H18O11 |
| Molecular weight: | 458.372 g/mol |
| DrugBank ID: | DB12116 |
| Buried Surface Area: | 53.65 % |
| Polar Surface area: | 197.36 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 11 |
| H-Bond Donors: | 8 |
| Rings: | 4 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 9.80676 | -33.81 | 19.8652 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C01 | CE2 | TYR- 24 | 4.14 | 0 | Hydrophobic |
| C26 | CB | TYR- 24 | 3.84 | 0 | Hydrophobic |
| DuAr | DuAr | TYR- 24 | 3.83 | 0 | Aromatic Face/Face |
| O03 | OE1 | GLU- 26 | 3.12 | 152.32 | H-Bond (Ligand Donor) |
| C43 | CB | ALA- 37 | 3.64 | 0 | Hydrophobic |
| C01 | CD1 | ILE- 38 | 4.37 | 0 | Hydrophobic |
| C41 | CG1 | ILE- 38 | 3.55 | 0 | Hydrophobic |
| C39 | CB | HIS- 41 | 3.68 | 0 | Hydrophobic |
| O50 | O | VAL- 122 | 3.04 | 147.48 | H-Bond (Ligand Donor) |
| O10 | NZ | LYS- 134 | 2.99 | 157.65 | H-Bond (Protein Donor) |
| O1 | MN | MN- 901 | 2.22 | 0 | Metal Acceptor |
| O7 | MN | MN- 901 | 2.14 | 0 | Metal Acceptor |
| DuAr | MN | MN- 901 | 3.97 | 96.25 | Pi/Cation |
| O1 | MN | MN- 902 | 1.93 | 0 | Metal Acceptor |