sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4awm	KDH	Polymerase acidic protein

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4awm	KDH	Polymerase acidic protein	/	1.000
4e5j	581	Polymerase acidic protein	/	0.584
4e5f	0N7	Polymerase acidic protein	/	0.535
4e5l	DBH	Polymerase acidic protein	/	0.532
4awk	CI1	Polymerase acidic protein	/	0.530
4e5h	0N8	Polymerase acidic protein	/	0.529
4e5i	0N9	Polymerase acidic protein	/	0.515
4awg	CI3	Polymerase acidic protein	/	0.505
4avg	SL6	Polymerase acidic protein	/	0.501
5ccy	TMP	Polymerase acidic protein	/	0.500
5fdg	0N8	Polymerase acidic protein	/	0.498
5d4g	U5P	Polymerase acidic protein	/	0.495