sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3pmu | F7L | Endothiapepsin | 3.4.23.22 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3pmu | F7L | Endothiapepsin | 3.4.23.22 | 1.000 | |
| 3prs | RIT | Endothiapepsin | 3.4.23.22 | 0.742 | |
| 4y3j | HIC | Endothiapepsin | 3.4.23.22 | 0.728 | |
| 3pgi | F41 | Endothiapepsin | 3.4.23.22 | 0.721 | |
| 4y45 | F91 | Endothiapepsin | 3.4.23.22 | 0.706 | |
| 2v00 | V15 | Endothiapepsin | 3.4.23.22 | 0.696 | |
| 4y4j | LNR | Endothiapepsin | 3.4.23.22 | 0.685 | |
| 3psy | RB9 | Endothiapepsin | 3.4.23.22 | 0.684 | |
| 4y38 | 0A9 | Endothiapepsin | 3.4.23.22 | 0.679 | |
| 4yd7 | F5N | Endothiapepsin | 3.4.23.22 | 0.673 | |
| 3pmy | 41L | Endothiapepsin | 3.4.23.22 | 0.668 | |
| 1od1 | 0QS | Endothiapepsin | 3.4.23.22 | 0.663 | |
| 3pi0 | F91 | Endothiapepsin | 3.4.23.22 | 0.656 | |
| 4y3q | F02 | Endothiapepsin | 3.4.23.22 | 0.652 | |
| 1gvt | 2ZS | Endothiapepsin | 3.4.23.22 | 0.639 | |
| 3pww | ROC | Endothiapepsin | 3.4.23.22 | 0.632 | |
| 2jjj | 0QS | Endothiapepsin | 3.4.23.22 | 0.631 | |
| 3t7p | 7SP | Endothiapepsin | 3.4.23.22 | 0.629 | |
| 1gvv | 0GM | Endothiapepsin | 3.4.23.22 | 0.627 | |
| 4y57 | F63 | Endothiapepsin | 3.4.23.22 | 0.625 | |
| 1e80 | 0GQ | Endothiapepsin | 3.4.23.22 | 0.622 | |
| 3pb5 | F63 | Endothiapepsin | 3.4.23.22 | 0.621 | |
| 3pm4 | F5N | Endothiapepsin | 3.4.23.22 | 0.618 | |
| 4zea | IMI | Endothiapepsin | 3.4.23.22 | 0.618 | |
| 1gvw | 0EM | Endothiapepsin | 3.4.23.22 | 0.613 | |
| 3t7x | 4SH | Endothiapepsin | 3.4.23.22 | 0.606 | |
| 3t6i | NC9 | Endothiapepsin | 3.4.23.22 | 0.602 | |
| 1e81 | M91 | Endothiapepsin | 3.4.23.22 | 0.600 | |
| 3t7q | RB4 | Endothiapepsin | 3.4.23.22 | 0.600 | |
| 4y3z | F41 | Endothiapepsin | 3.4.23.22 | 0.599 | |
| 1e82 | M90 | Endothiapepsin | 3.4.23.22 | 0.582 | |
| 3pbz | F02 | Endothiapepsin | 3.4.23.22 | 0.565 | |
| 1ppk | IVV | Penicillopepsin-1 | 3.4.23.20 | 0.562 | |
| 3tne | RIT | Candidapepsin-1 | 3.4.23.24 | 0.534 | |
| 2wec | PP5 | Penicillopepsin-1 | 3.4.23.20 | 0.525 | |
| 2web | PP4 | Penicillopepsin-1 | 3.4.23.20 | 0.519 | |
| 1zap | A70 | Candidapepsin-2 | 3.4.23.24 | 0.508 | |
| 1bxo | PP7 | Penicillopepsin-1 | 3.4.23.20 | 0.506 | |
| 3t6i | NC8 | Endothiapepsin | 3.4.23.22 | 0.505 | |
| 1bxq | PP8 | Penicillopepsin-1 | 3.4.23.20 | 0.504 | |
| 1ppl | 1Z7 | Penicillopepsin-1 | 3.4.23.20 | 0.495 | |
| 1ppm | 0P1 | Penicillopepsin-1 | 3.4.23.20 | 0.492 | |
| 2wed | PP6 | Penicillopepsin-1 | 3.4.23.20 | 0.492 | |
| 2jji | 0QS | Endothiapepsin | 3.4.23.22 | 0.489 | |
| 3isj | A8D | Pantothenate synthetase | 6.3.2.1 | 0.483 | |
| 3q70 | RIT | Candidapepsin-2 | 3.4.23.24 | 0.483 | |
| 3coy | 53H | Pantothenate synthetase | 6.3.2.1 | 0.482 | |
| 1n2i | PAJ | Pantothenate synthetase | 6.3.2.1 | 0.478 | |
| 1eag | A70 | Candidapepsin-2 | 3.4.23.24 | 0.477 | |
| 3cow | 52H | Pantothenate synthetase | 6.3.2.1 | 0.473 | |
| 3ioc | A5D | Pantothenate synthetase | 6.3.2.1 | 0.471 | |
| 3img | BZ2 | Pantothenate synthetase | 6.3.2.1 | 0.470 | |
| 3coz | 54H | Pantothenate synthetase | 6.3.2.1 | 0.469 | |
| 1psa | 0ZL | Pepsin A | 3.4.23.1 | 0.468 | |
| 2x3f | APC | Pantothenate synthetase | / | 0.467 | |
| 3ime | BZ2 | Pantothenate synthetase | 6.3.2.1 | 0.466 | |
| 3ioe | A7D | Pantothenate synthetase | 6.3.2.1 | 0.466 | |
| 1n2h | PAJ | Pantothenate synthetase | 6.3.2.1 | 0.459 | |
| 3nsh | 957 | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 4i0i | 957 | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 3img | BZ3 | Pantothenate synthetase | 6.3.2.1 | 0.456 | |
| 3iod | A6D | Pantothenate synthetase | 6.3.2.1 | 0.456 | |
| 3q43 | D66 | M1 family aminopeptidase | 3.4.11 | 0.456 | |
| 2dvl | FAD | Acyl-CoA dehydrogenase | / | 0.455 | |
| 2jds | L20 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.454 | |
| 1qrp | HH0 | Pepsin A-4 | 3.4.23.1 | 0.452 | |
| 4iql | FMN | Enoyl-(Acyl-carrier-protein) reductase II | / | 0.449 | |
| 4m9a | FDA | Acyl-CoA dehydrogenase | / | 0.449 | |
| 2f7x | 4EA | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.448 | |
| 5hg0 | SAM | Pantothenate synthetase | / | 0.447 | |
| 4ddh | MS0 | Pantothenate synthetase | 6.3.2.1 | 0.445 | |
| 4eag | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.445 | |
| 5kwv | ANP | Pantothenate synthetase | / | 0.444 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.443 | |
| 2bf4 | FMN | NADPH--cytochrome P450 reductase | / | 0.443 | |
| 2dvo | ITT | dITP/XTP pyrophosphatase | 3.6.1.19 | 0.443 | |
| 3ely | SAH | Methyltransferase | / | 0.443 | |
| 2iea | TDP | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.442 | |
| 2g22 | 6IG | Renin | 3.4.23.15 | 0.441 | |
| 3tza | TZG | Glutamate receptor 2 | / | 0.441 |