1.350 Å
X-ray
2011-07-30
Name: | Endothiapepsin |
---|---|
ID: | CARP_CRYPA |
AC: | P11838 |
Organism: | Cryphonectria parasitica |
Reign: | Eukaryota |
TaxID: | 5116 |
EC Number: | 3.4.23.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 10.954 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.672 | 675.000 |
% Hydrophobic | % Polar |
---|---|
42.50 | 57.50 |
According to VolSite |
HET Code: | 7SP |
---|---|
Formula: | C19H18N3O2 |
Molecular weight: | 320.365 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 49.62 % |
Polar Surface area: | 89.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
0.852208 | 6.36687 | 12.4312 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C19 | CB | SER- 38 | 3.74 | 0 | Hydrophobic |
C20 | CD1 | ILE- 77 | 3.77 | 0 | Hydrophobic |
C12 | CD2 | TYR- 79 | 3.92 | 0 | Hydrophobic |
C6 | CB | TYR- 79 | 3.65 | 0 | Hydrophobic |
DuAr | DuAr | TYR- 79 | 3.99 | 0 | Aromatic Face/Face |
O9 | N | ASP- 81 | 3.01 | 131.58 | H-Bond (Protein Donor) |
N24 | OD2 | ASP- 81 | 3.27 | 122.54 | H-Bond (Ligand Donor) |
N24 | OD2 | ASP- 81 | 3.27 | 0 | Ionic (Ligand Cationic) |
C3 | CD1 | LEU- 125 | 3.48 | 0 | Hydrophobic |
C21 | CB | LEU- 133 | 4.29 | 0 | Hydrophobic |
C22 | CD2 | LEU- 133 | 4.45 | 0 | Hydrophobic |
N10 | O | HOH- 510 | 2.85 | 154.28 | H-Bond (Ligand Donor) |