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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bi2FADPolyamine oxidase FMS1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bi2FADPolyamine oxidase FMS1/1.000
3cndFADPolyamine oxidase FMS1/0.648
4gdpFADPolyamine oxidase FMS1/0.623
3bi5FADPolyamine oxidase FMS1/0.584
1xpqFADPolyamine oxidase FMS1/0.581
4echFADPolyamine oxidase FMS1/0.560
3cn8FADPolyamine oxidase FMS1/0.559
2hkoFADLysine-specific histone demethylase 1A10.550
2uxxFAJLysine-specific histone demethylase 1A10.540
2yg4FADPutrescine oxidase/0.539
1rsgFADPolyamine oxidase FMS1/0.537
3cntFADPolyamine oxidase FMS1/0.532
2yg5FADPutrescine oxidase/0.524
2dw4FADLysine-specific histone demethylase 1A10.520
2iw5FADLysine-specific histone demethylase 1A10.511
5l3dFADLysine-specific histone demethylase 1A10.511
1z6lFADPolyamine oxidase FMS1/0.510
4fwjFADLysine-specific histone demethylase 1B10.509
3rhaFDAPutrescine oxidase/0.498
3kpfFADPolyamine oxidase1.5.3.140.497
4xbfFADLysine-specific histone demethylase 1A10.496
2vvlFADMonoamine oxidase N1.4.3.40.487
4guuFA9Lysine-specific histone demethylase 1B10.486
3k7tFAD6-hydroxy-L-nicotine oxidase/0.484
3zdnFADMonoamine oxidase N1.4.3.40.484
2jaeFADL-amino acid oxidase/0.478
4gutFADLysine-specific histone demethylase 1B10.477
1h81FADPolyamine oxidase1.5.3.140.470
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.470
2babFADPutative aminooxidase/0.466
3we0FADLysine 2-monooxygenase/0.465
1h83FADPolyamine oxidase1.5.3.140.459
2fzwNADAlcohol dehydrogenase class-31.1.1.10.459
1f8sFADL-amino-acid oxidase1.4.3.20.458
2bacFADPutative aminooxidase/0.458
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.455
5dp2NAPCurF/0.455
4z26FADPutative GMC-type oxidoreductase R13510.452
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.451
4at0FADPossible succinate dehydrogenase/0.451
4i58FADCyclohexylamine Oxidase/0.451
3k7mFAD6-hydroxy-L-nicotine oxidase/0.446
3lpkZ76Beta-secretase 13.4.23.460.446
4fweFADLysine-specific histone demethylase 1B10.446
4kx6FADFumarate reductase flavoprotein subunit1.3.5.40.446
5ez7FADProbable FAD-dependent oxidoreductase PA4991/0.446
1d4dFADFumarate reductase flavoprotein subunit1.3.5.40.445
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
2e1mFADL-glutamate oxidase/0.442
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441