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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1gawFADFerredoxin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1gawFADFerredoxin/1.000
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.685
3vo2FADFerredoxin--NADP reductase/0.666
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.653
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.626
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.623
1gaqFADFerredoxin/0.622
1sm4FADFerredoxin--NADP reductase/0.620
1gjrFADFerredoxin--NADP reductase1.18.1.20.615
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.610
3zc3FADFerredoxin--NADP reductase1.18.1.20.610
1h42FADFerredoxin--NADP reductase1.18.1.20.609
3w5uFADFerredoxin/0.609
1queFADFerredoxin--NADP reductase1.18.1.20.607
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.600
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.600
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.590
1w35FADFerredoxin--NADP reductase1.18.1.20.573
1ogjFADFerredoxin--NADP reductase1.18.1.20.572
2rc6FADFerredoxin--NADP reductase/0.568
4bprFADFerredoxin--NADP reductase1.18.1.20.566
4c43FADFerredoxin--NADP reductase1.18.1.20.566
2b5oFADFerredoxin--NADP reductase1.18.1.20.562
3fpkFADFerredoxin-NADP reductase/0.562
1e64FADFerredoxin--NADP reductase1.18.1.20.560
2rc5FADFerredoxin--NADP reductase/0.559
1bjkFADFerredoxin--NADP reductase1.18.1.20.556
1e62FADFerredoxin--NADP reductase1.18.1.20.555
1ogiFADFerredoxin--NADP reductase1.18.1.20.555
1go2FADFerredoxin--NADP reductase1.18.1.20.554
1w87FADFerredoxin--NADP reductase1.18.1.20.547
1h85FADFerredoxin--NADP reductase1.18.1.20.545
2ok8FADFerredoxin--NADP reductase, apicoplast/0.543
1qgyFADFerredoxin--NADP reductase1.18.1.20.542
1e63FADFerredoxin--NADP reductase1.18.1.20.541
1qh0FADFerredoxin--NADP reductase1.18.1.20.540
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.540
3jqrFADFerredoxin--NADP reductase, apicoplast/0.532
3qe2FADNADPH--cytochrome P450 reductase/0.526
1qgzFADFerredoxin--NADP reductase1.18.1.20.523
3zbtFADFerredoxin--NADP reductase1.18.1.20.523
1amoFADNADPH--cytochrome P450 reductase/0.519
1j9zFADNADPH--cytochrome P450 reductase/0.518
3qfcFADNADPH--cytochrome P450 reductase/0.517
4y9rFADNADPH--cytochrome P450 reductase/0.516
3qfsFADNADPH--cytochrome P450 reductase/0.515
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/0.514
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.509
1ewyFADFerredoxin--NADP reductase1.18.1.20.506
3ojxFADNADPH--cytochrome P450 reductase/0.506
1gr1FADFerredoxin--NADP reductase1.18.1.20.505
1ja1FADNADPH--cytochrome P450 reductase/0.503
3qftFADNADPH--cytochrome P450 reductase/0.502
4y9uFADNADPH--cytochrome P450 reductase/0.501
1b2rFADFerredoxin--NADP reductase1.18.1.20.498
2bpoFADNADPH--cytochrome P450 reductase/0.486
4yaoFADNADPH--cytochrome P450 reductase/0.486
2piaFMNPhthalate dioxygenase reductase/0.482
4yafFADNADPH--cytochrome P450 reductase/0.480
1tllFADNitric oxide synthase, brain1.14.13.390.474
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.473
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.472
2vn1FK5Peptidylprolyl isomerase/0.463
1fdrFADFerredoxin--NADP reductase1.18.1.20.461
2cmfF11Acetylcholinesterase3.1.1.70.459
3c1oNAPEugenol synthase/0.459
3g4kROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.459
3h3r14HCollagen type IV alpha-3-binding protein/0.455
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.453
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.453
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.451
2bgjFADNADPH:ferredoxin reductase/0.451
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.451
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.449
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.448
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.447
1f20FADNitric oxide synthase, brain1.14.13.390.446
2vnkFADNADPH:ferredoxin reductase/0.446
4b4dFADFerredoxin-NADP reductase/0.446
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
3ojwFMNNADPH--cytochrome P450 reductase/0.445
1ndzFR5Adenosine deaminase3.5.4.40.444
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.444
4q0kGA3Phytohormone-binding protein/0.444
1w34FADFerredoxin--NADP reductase1.18.1.20.443
3rsv3RSBeta-secretase 13.4.23.460.443
4fk8FADFerredoxin--NADP reductase/0.443
5a4vQUEGlutathione S-transferase F22.5.1.180.443
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.442
1a8pFADFerredoxin--NADP reductase/0.441
4a6eASEAcetylserotonin O-methyltransferase2.1.1.40.441
4yauFADNADPH--cytochrome P450 reductase/0.441
1eveE20Acetylcholinesterase3.1.1.70.440
2vnhFADNADPH:ferredoxin reductase/0.440
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.440
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
4k1xFADNADPH:ferredoxin reductase/0.440